CN188808

Overview
NameCN188808
Unique NameCN188808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  465 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVL 71          
BLAST of CN188808 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  459 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 671
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVL 71          
The following BLAST results are available for this feature:
BLAST of CN188808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
NEDD8_CAEEL1.920e-1759.15NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ARATH4.277e-1760.87NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT2.772e-1654.93NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT2.772e-1654.93NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE2.772e-1654.93NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN2.772e-1654.93NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN2.772e-1654.93NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ3.621e-1652.11NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB3_ARATH2.347e-1553.52NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI5.228e-1552.11NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188808 ID=CN188808; Name=CN188808; organism=Citrus sinensis; type=EST; length=674bp
AGTAATAAGTATTATTATGTCATTAATAGTATGAAATATGAAAAGAACAA
ATAAATAATTCAATACATTAATCTCCAATCACCCTCGAAAATAATATCCT
AGTAATAGTTTTCTTCCGTTACCAAACGACTTAGTGCTTCAGGAGAGCGA
GAAGAGAAACAAACAGCGAAGATGCAATAACAGCACCGGAAACCGGCAGA
GAAGAGGCTGCTCCGGTGTCCAATGAAGGAGATGGTGCGGGGGCCATCTC
GGTGCTTTGAGCTGAAGCAGCAGCCATTGCAAAAGCTGCCAAAACGAACA
CCATCACGACTGACTTTAAGCTGCTAATTTGCCCCATCTGTGTTAATATT
AATTGCTGAAGAAAAACAAGAAGCAAGAACTATATGTGAAATCACTTGGC
CGATTACAATATCCAGAAGGAATCAACTCTTCACCTCGTGCTTCGTCTCC
GTGGGGGCATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACC
CTCGAAGTCGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCA
GGACAAGGAAGGGATTCCGCCGGACCAGCAGCGTTTGATCTTCGCTGGCA
AGCAGCTGGAGGATGGAAGGACGCTCGCGGATTACAACATTCAGAAGGAA
TCAACTCTTCATCTGGTTTTGCGT
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