CN181946

Overview
NameCN181946
Unique NameCN181946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.524e-26
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  259 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSR-------NEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAFFIGSRTERDLPTKEFECSDKSTSKSIPWSVDE 669
            KSDV+SFGV+VLEI++GKKN  FY  D   DLLSY W  W++G  L+++D  + DS S         EV++CIQ+GLLCVQE    RP+M+++V M  S +  +P P+ P + +        P+  ++C +  +     W+V++
Sbjct:  710 KSDVFSFGVIVLEIVSGKKNRGFYNLDYENDLLSYVWSRWKEGRALEIVDPVIVDSLSSQPSIFQPQEVLKCIQIGLLCVQELAEHRPAMSSVVWMFGSEATEIPQPKPPGYCVRRSPYELDPSSSWQCDENES-----WTVNQ 848          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK27_ARATH (Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.751e-23
Identity = 52/108 (48.15%), Postives = 78/108 (72.22%), Query Frame = -1
Query:  352 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVT--LPSPQHPAFF 669
            K+DVYSFGVLVLEIITGK+NS     +G  DL ++AW++W +GT ++L+D  L  ++ + E ++C+++ L CVQE+P +RP+M ++V ML+S S +  LP P  P FF
Sbjct:  515 KTDVYSFGVLVLEIITGKRNSGLGLGEGT-DLPTFAWQNWIEGTSMELIDPVLLQTHDKKESMQCLEIALSCVQENPTKRPTMDSVVSMLSSDSESRQLPKPSQPGFF 621          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK36_ARATH (Cysteine-rich receptor-like protein kinase 36 OS=Arabidopsis thaliana GN=CRK36 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 63/147 (42.86%), Postives = 93/147 (63.27%), Query Frame = -1
Query:  232 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLML-NSYSVTLPSPQHPAFFIGSRTERDLPTKEFECSDKSTSKSIPWSVDEASITEVYPR 669
            KSDVYSFGV++LE+I+G+KN +F +T+G   L ++AWK W +G    ++D  L ++  RNE+I+ IQ+GLLCVQE+ A+RP+M +++  L    + T+P P   AF     + +       E  DK      P+SVDE SIT +YPR
Sbjct:  522 KSDVYSFGVMLLEMISGEKNKNF-ETEG---LPAFAWKRWIEGELESIIDPYLNEN-PRNEIIKLIQIGLLCVQENAAKRPTMNSVITWLARDGTFTIPKPTEAAFVTLPLSVKPENRSMSERKDKD-----PFSVDEVSITVLYPR 658          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 53/115 (46.09%), Postives = 86/115 (74.78%), Query Frame = -1
Query:  325 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAFFIGSRTERDL 669
            KSDVYSFGV++LE+I+G++N+SF + +G A   ++AWK W +G P  ++D  L +   RNE+I+ IQ+GLLCVQE+P +RP+M+++++ L S +  +P P+ PA F GSR++ ++
Sbjct:  535 KSDVYSFGVMLLEMISGERNNSF-EGEGLA---AFAWKRWVEGKPEIIIDPFLIEK-PRNEIIKLIQIGLLCVQENPTKRPTMSSVIIWLGSETNIIPLPKAPA-FTGSRSQSEI 643          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 52/113 (46.02%), Postives = 86/113 (76.11%), Query Frame = -1
Query:  334 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAF-FIGSRTE 669
            KSDVYSFGV++LE+I+G++N+SF + +G A   ++AWK W +G P  ++D  L ++  RNE+I+ IQ+GLLCVQE+  +RP+M+++++ L S ++ +P P+ PAF +I S++E
Sbjct:  530 KSDVYSFGVMLLEMISGERNNSF-EGEGLA---AFAWKRWVEGKPEIIIDPFLIEN-PRNEIIKLIQIGLLCVQENSTKRPTMSSVIIWLGSETIIIPLPKAPAFTWIRSQSE 637          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK38_ARATH (Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana GN=CRK38 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 54/146 (36.99%), Postives = 87/146 (59.59%), Query Frame = -1
Query:  232 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAFFIGSRTERDLPTKEFECSDKSTSKSIPWSVDEASITEVYPR 669
            K+DVYSFGV++LE+ITG+ N ++++  G   L +YAWK W  G    ++D  L+ S S NE++R I +GLLCVQE+ ++RP+M+ ++  L S ++ +P P    F                 S ++  ++   S++E SITE+ PR
Sbjct:  521 KTDVYSFGVVLLEMITGRSNKNYFEALG---LPAYAWKCWVAGEAASIIDHVLSRSRS-NEIMRFIHIGLLCVQENVSKRPTMSLVIQWLGSETIAIPLPTVAGF--------------TNASYQAEHEAGTLSLNELSITELSPR 648          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK2_ARATH (Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  355 DVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLT-----DSY-SRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAF 663
            DVYSFGVLVLEI+TGK+N+    +D +  L++ AWKH++ G   ++ D NL      DS+  + E+ R +Q+GLLC QE P+ RP M+ ++ ML +    LP P +P F
Sbjct:  508 DVYSFGVLVLEIVTGKQNTKSKMSDYSDSLITEAWKHFQSGELEKIYDPNLDWKSQYDSHIIKKEIARVVQIGLLCTQEIPSLRPPMSKLLHMLKNKEEVLPLPSNPPF 616          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK1_ARATH (Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = -1
Query:  316 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAFFIGSRTERDLPTK 669
            K+DVY+FGVL++EI+TGKKN++F  T G + +L   W+H++  T  + +D  L  S+   E ++ +Q+GLLCVQ     RPSM+ IV ML +       P+ P F   S    D  T+
Sbjct:  499 KADVYAFGVLIIEIVTGKKNNAF--TQGTSSVLYSVWEHFKANTLDRSIDPRLKGSFVEEEALKVLQIGLLCVQSSVELRPSMSEIVFMLQNKDSKFEYPKQPPFLSASVLMPDEETR 614          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK43_ARATH (Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = -1
Query:  355 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAF 669
            K D YSFGVLVLEI +G +N+ F   +    L++  WK +      +++D ++ +   + E+ R +Q+GLLC QE P  RP+M+ ++ M++S  + LP+P  P F
Sbjct:  516 KIDAYSFGVLVLEITSGFRNNKFRSDNSLETLVTQVWKCFASNKMEEMIDKDMGEDTDKQEMKRVMQIGLLCTQESPQLRPTMSKVIQMVSSTDIVLPTPTKPPF 620          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 42/105 (40.00%), Postives = 68/105 (64.76%), Query Frame = -1
Query:  355 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAF 669
            K+DVYSFGVL++E+ITGK+N++F Q  G+  +L   W  +R     + +D  L D++++ E  R +Q+GLLCVQ    +RP+M+ +V M+   S+ + +P  P F
Sbjct:  504 KADVYSFGVLMIEVITGKRNNAFVQDAGS--ILQSVWSLYRTSNVEEAVDPILGDNFNKIEASRLLQIGLLCVQAAFDQRPAMSVVVKMMKG-SLEIHTPTQPPF 605          
The following BLAST results are available for this feature:
BLAST of CN181946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SRK6_BRAOE6.524e-2639.58Putative serine/threonine-protein kinase receptor ... [more]
CRK27_ARATH6.751e-2348.15Cysteine-rich receptor-like protein kinase 27 OS=A... [more]
CRK36_ARATH1.152e-2242.86Cysteine-rich receptor-like protein kinase 36 OS=A... [more]
CRK39_ARATH2.566e-2246.09Putative cysteine-rich receptor-like protein kinas... [more]
CRK40_ARATH1.663e-2146.02Cysteine-rich receptor-like protein kinase 40 OS=A... [more]
CRK38_ARATH1.721e-1836.99Cysteine-rich receptor-like protein kinase 38 OS=A... [more]
CRK2_ARATH5.007e-1844.04Cysteine-rich receptor-like protein kinase 2 OS=Ar... [more]
CRK1_ARATH5.007e-1839.83Cysteine-rich receptor-like protein kinase 1 OS=Ar... [more]
CRK43_ARATH2.104e-1637.14Putative cysteine-rich receptor-like protein kinas... [more]
CRK3_ARATH3.038e-1540.00Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181946 ID=CN181946; Name=CN181946; organism=Citrus sinensis; type=EST; length=669bp
TTTGATATCCCACGTTGTATCTTTACTCACACATACCATATTCATATACT
TCAACGAATAAAAACTTTGGATAAAGCAACGCGGCATAATTCAATTCGAA
GGGCACCTCCTCTTTTTCATTATTGCTTGTCGTAAACCATGCCATTCTCC
CCCATACCGTACCAGCCCTGCCCCTCGGTAGATCATATACTAACATAAAG
AAGAAGCATCATTAACAGTTCTTACAAGTTAACGGGGGTATACTTCAGTA
ATTGACGCTTCATCAACAGACCATGGAATCGACTTGCTTGTAGATTTATC
AGAGCACTCAAATTCTTTTGTGGGCAAGTCCCTCTCAGTTCGACTGCCTA
TGAAAAATGCAGGATGTTGAGGCGACGGAAGTGTGACAGAGTAACTATTG
AGCATGAGAACTATTGTTGCCATTGATGGCCTCTCAGCTGGATCTTCCTG
GACGCATAATAAGCCCAATTGGATGCATCTAATCACTTCATTTCTTGAGT
AAGAATCTGTCAGATTTGAATCCAGCAACTGCAAAGGTGTTCCATCCCTC
CAATGTTTCCAAGCATAGCTCAAAAGATCTGCAGCACCATCTGTTTGATA
AAAGCTGCTGTTCTTCTTGCCAGTTATAATCTCCAGGACGAGGACACCAA
AACTATATACATCTGATTT
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