CN181946

Overview
NameCN181946
Unique NameCN181946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK37_ARATH (Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 43/110 (39.09%), Postives = 73/110 (66.36%), Query Frame = -1
Query:  355 KSDVYSFGVLVLEIITGKKNSSFY--QTDGAADLLSYAWKHWRDGTPLQLLD--SNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSY-SVTLPSPQHPAF 669
            KSDVYSFGV++LE+I+GK N      + +   +L ++ WK W +G   +++D  +  +++ S NEV++ I +GLLCVQED ++RPS+ +I+  L  + ++T+P P   A+
Sbjct:  527 KSDVYSFGVMLLEMISGKSNKKLEKEEEEEEEELPAFVWKRWIEGRFAEIIDPLAAPSNNISINEVMKLIHIGLLCVQEDISKRPSINSILFWLERHATITMPVPTPVAY 636          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  400 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLML 669
            K+DVYSFGV+ LEI++GK N+++   +    LL +A+     G+ L+L+D +L  S+S+ E +R + + LLC    P  RP M+++V ML
Sbjct:  851 KADVYSFGVVCLEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSML 940          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  400 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLML 669
            K+DVYSFGV+ LEI++GK N+++   +    LL +A+     G+ L+L+D +L  S+S+ E +R + + LLC    P  RP M+++V ML
Sbjct:  849 KADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSML 938          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = -1
Query:  355 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAF 669
            K+DVYSFGV+ LEI++GK N++F  T+    LL +A+     G+ L+L+D  L   YS  E +  + + L+C    P  RP+M+ +V ++   +        P+F
Sbjct:  861 KADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEGKTAMQELLSDPSF 965          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 50/148 (33.78%), Postives = 72/148 (48.65%), Query Frame = -1
Query:  247 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSY-----SRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNSYSVTLPSPQHPAFFIGSRTERDLPTKE--FECSDKSTSKSIPWSVDEASIT 669
            K+DVYSFGVLVLEI  G + ++F    G   LL   W  +     ++ LD  L D +     S  E  + +++GLLC Q  P+ RPSM  ++ ML      +PSP  P F   S    DL         ++ +T+ +     D+AS T
Sbjct:  496 KADVYSFGVLVLEIACGTRINAFVPETG--HLLQRVWNLYTLNRLVEALDPCLKDEFLQVQGSEAEACKVLRVGLLCTQASPSLRPSMEEVIRMLTERDYPIPSPTSPPFLRVSSLTTDLEGSSTISHSTNSTTTFNTMVKTDQASYT 641          
BLAST of CN181946 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = -1
Query:  370 KSDVYSFGVLVLEIITGKKNSSFYQTDGAADLLSYAWKHWRDGTPLQLLDSNLTDSYSRNEVIRCIQLGLLCVQEDPAERPSMATIVLMLNS-YSVTLPSP 669
            K+DVYSFGVLVLEI+ G  NS+F     +  LL +A +    G  +Q++D  L     R E    I++ L+C    P +RP M+ +V ML   Y V   +P
Sbjct:  863 KADVYSFGVLVLEIVAGITNSNFMGAGDSVCLLEFANECVESGHLMQVVDERLRPEVDRKEAEAVIKVALVCSSASPTDRPLMSEVVAMLEGLYPVPESTP 963          
The following BLAST results are available for this feature:
BLAST of CN181946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CRK37_ARATH5.181e-1539.09Cysteine-rich receptor-like protein kinase 37 OS=A... [more]
Y5343_ARATH3.713e-1340.00Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH4.850e-1340.00Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH8.272e-1334.29Probable LRR receptor-like serine/threonine-protei... [more]
CRK42_ARATH8.272e-1333.78Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
RKF1_ARATH5.928e-1138.61Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181946 ID=CN181946; Name=CN181946; organism=Citrus sinensis; type=EST; length=669bp
TTTGATATCCCACGTTGTATCTTTACTCACACATACCATATTCATATACT
TCAACGAATAAAAACTTTGGATAAAGCAACGCGGCATAATTCAATTCGAA
GGGCACCTCCTCTTTTTCATTATTGCTTGTCGTAAACCATGCCATTCTCC
CCCATACCGTACCAGCCCTGCCCCTCGGTAGATCATATACTAACATAAAG
AAGAAGCATCATTAACAGTTCTTACAAGTTAACGGGGGTATACTTCAGTA
ATTGACGCTTCATCAACAGACCATGGAATCGACTTGCTTGTAGATTTATC
AGAGCACTCAAATTCTTTTGTGGGCAAGTCCCTCTCAGTTCGACTGCCTA
TGAAAAATGCAGGATGTTGAGGCGACGGAAGTGTGACAGAGTAACTATTG
AGCATGAGAACTATTGTTGCCATTGATGGCCTCTCAGCTGGATCTTCCTG
GACGCATAATAAGCCCAATTGGATGCATCTAATCACTTCATTTCTTGAGT
AAGAATCTGTCAGATTTGAATCCAGCAACTGCAAAGGTGTTCCATCCCTC
CAATGTTTCCAAGCATAGCTCAAAAGATCTGCAGCACCATCTGTTTGATA
AAAGCTGCTGTTCTTCTTGCCAGTTATAATCTCCAGGACGAGGACACCAA
AACTATATACATCTGATTT
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