CN181936

Overview
NameCN181936
Unique NameCN181936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 211.846 bits (538), Expect = 2.519e-54
Identity = 100/149 (67.11%), Postives = 122/149 (81.88%), Query Frame = -2
Query:  222 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGG 668
            PRGVPQI V FDIDANGILNV+A DK+TG+ NKITITNDKGRLSKEEIE+MVQEAEKYKAED+  +++V AKN LE+YA+NM++ ++DE +  K+  ADKKK+ D  ++ I WLD N LAE DEFE K KELE +CNPII+ +YQG GG
Sbjct:  468 PRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGG 616          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.290e-54
Identity = 100/149 (67.11%), Postives = 122/149 (81.88%), Query Frame = -2
Query:  222 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGG 668
            PRGVPQI V FDIDANGILNV+A DK+TG+ NKITITNDKGRLSKEEIE+MVQEAEKYKAED+  +++V AKN LE+YA+NM++ ++DE +  K+  ADKKK+ D  ++ I WLD N LAE DEFE K KELE +CNPII+ +YQG GG
Sbjct:  468 PRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGG 616          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.611e-54
Identity = 100/149 (67.11%), Postives = 120/149 (80.54%), Query Frame = -2
Query:  222 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGG 668
            PRGVPQI V FDIDANGILNV+A DK+TG+ NKITITNDKGRLSKEEIE+MVQEAEKYKAED+  + +V AKN LE+YA+NM++ ++DE +  K+  ADKKK+ D  ++ I WLD N LAE DEFE K KELE +CNPII  +YQG GG
Sbjct:  468 PRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEVQRDRVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIITGLYQGAGG 616          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.611e-54
Identity = 100/149 (67.11%), Postives = 122/149 (81.88%), Query Frame = -2
Query:  222 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGG 668
            PRGVPQI V FDIDANGILNV+A DK+TG+ NKITITNDKGRLSKEEIE+MVQEAEKYKAED+  +++V AKN LE+YA+NM++ ++DE +  K+  ADKKK+ D  ++ I WLD N LAE DEFE K KELE +CNPII+ +YQG GG
Sbjct:  468 PRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDEIQRERVGAKNALESYAFNMKSVVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGG 616          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.571e-54
Identity = 97/149 (65.10%), Postives = 124/149 (83.22%), Query Frame = -2
Query:  222 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGG 668
            PRGVPQI V FDIDANGILNVSA DK+TG++NKITITNDKGRLSK++IE+MV EAEKYKA+D+  K ++ AKNGLE+YA+N++ TI+DEK+  K+   DKKKIED  ++ ++WLD NQ AE +EFE + K+LEG+ NPII+K+YQ  GG
Sbjct:  469 PRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGG 617          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.571e-54
Identity = 96/154 (62.34%), Postives = 126/154 (81.82%), Query Frame = -2
Query:  207 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGGDAGAS 668
            PRGVPQI V FDIDANGILNV+A DK+TG++NKITITNDKGRLSK++I++MVQEAE+YK+ED+ ++ +V AKN +E+Y YN++ T++DEK+  K+   DK KI D  ++ I WLD NQ+AE DE+E K KELE +CNPII+K+YQGG G  G+S
Sbjct:  471 PRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGSS 624          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.571e-54
Identity = 96/154 (62.34%), Postives = 126/154 (81.82%), Query Frame = -2
Query:  207 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGGDAGAS 668
            PRGVPQI V FDIDANGILNV+A DK+TG++NKITITNDKGRLSK++I++MVQEAE+YK+ED+ ++ +V AKN +E+Y YN++ T++DEK+  K+   DK KI D  ++ I WLD NQ+AE DE+E K KELE +CNPII+K+YQGG G  G+S
Sbjct:  471 PRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGSS 624          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.571e-54
Identity = 98/155 (63.23%), Postives = 124/155 (80.00%), Query Frame = -2
Query:  204 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGGDAGASM 668
            PRGVPQ+ V FD+DANGILNVSAEDK+TG K KITITNDKGRLSKEEIEKMV +AEK+K +D++ K +VE+KN LENYA+ ++N+IKDEK++AK+  +DK  IE   E  ++WL+ NQ AE DE+EDKMK LE + NPI++K+YQ GG   G  M
Sbjct:  466 PRGVPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGM 620          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 98/154 (63.64%), Postives = 122/154 (79.22%), Query Frame = -2
Query:  207 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGGGGDAGAS 668
            PRGVPQI V FDIDANGILNVSA DKTTG+ N+ITITNDKGRLSKEEIE+MV EAEKYKAED+E   ++ ++N LE+YAYN+RN++ DEK++ K  AADKKK+EDA+   I WLD +Q A  +E+E+  KELE + NPI+ K+Y G GG  G +
Sbjct:  466 PRGVPQIEVTFDIDANGILNVSASDKTTGKSNRITITNDKGRLSKEEIERMVNEAEKYKAEDEEATARITSRNALESYAYNLRNSLTDEKLADKFDAADKKKLEDAVNSTISWLDNSQEASKEEYEEHQKELEAVANPIMQKLYAGAGGAPGGA 619          
BLAST of CN181936 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.633e-53
Identity = 99/160 (61.88%), Postives = 128/160 (80.00%), Query Frame = -2
Query:  207 PRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDDEHKKKVEAKNGLENYAYNMRNTIKDEKISAKLPAADKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQG------GGGDAGAS 668
            PRGVPQI V FDIDANGILNV+A DK+TG++NKITITNDKGRLSK++I++MVQEAE+YK+ED+ ++ +V AKN LE+Y YN++ T++DEK+  K+   DK KI D  ++ I WLD NQ+AE DE+E K KELE +CNPII+K+YQG      GGG +GAS
Sbjct:  471 PRGVPQIEVTFDIDANGILNVTAADKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKSEDEANRDRVAAKNALESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGSGGGGSGAS 630          
The following BLAST results are available for this feature:
BLAST of CN181936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_HUMAN2.519e-5467.11Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]
HS71B_PIG3.290e-5467.11Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP71_CANFA5.611e-5467.11Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HS71A_PIG5.611e-5467.11Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP7A_CAEEL9.571e-5465.10Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP72_RAT9.571e-5462.34Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE9.571e-5462.34Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HS7C1_DICDI9.571e-5463.23Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]
HSP71_PUCGR1.250e-5363.64Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP72_HUMAN1.633e-5361.88Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181936 ID=CN181936; Name=CN181936; organism=Citrus sinensis; type=EST; length=669bp
CCCTTTTTTAAACTAATATCTTTATGCAGACACCAGGAAACAGTTTTATA
TGTAACATAAGCAGGAAAAGGAAGAAAAGATCACACTCCCAACTCAACCC
CTAATCATTAACCAACATTAAGCATAAATCCTCAAATTTAATCCACCTCC
TCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCTC
ATCCATACTTGCACCAGCATCACCTCCACCTCCTTGGTACATCTTGGCAA
TAATTGGGTTGCAGATGCCCTCCAGCTCTTTCATCTTATCTTCAAACTCA
TCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTGCTCAAT
GGCATCTTCAATTTTCTTCTTGTCAGCAGCAGGAAGCTTTGCGCTGATCT
TTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGACCA
TTCTTCGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATTT
TTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCTTAGAGAGTCTGCCCT
TGTCATTTGTGATGGTAATCTTATTCTTCTGTCCGGTGGTTTTGTCCTCA
GCAGAAACGTTCAAGATACCATTAGCATCAATGTCAAAGCACACATTGAT
TTGTGGAACCCCTCTTGGA
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