CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 83/203 (40.89%), Postives = 121/203 (59.61%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            + LPDLPY Y ALEP I  E M LHH + H  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+A FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 83/203 (40.89%), Postives = 121/203 (59.61%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            + LPDLPY Y ALEP I  E M LHH + H  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+A FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 83/203 (40.89%), Postives = 121/203 (59.61%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            + LPDLPY Y ALEP I  E M LHH + H  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+A FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.052e-36
Identity = 86/209 (41.15%), Postives = 119/209 (56.94%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 707
            TLP+L Y Y ALEP    + M++HH + HQAY+ N N A+E   + L K   + +  L         A++ N GGHVNH++FWK L       G     +L  AI+  FGS+EA   +         GSGW WL L  E  +L V +TANQD PL+ K    V   P+L +DVWEHAYYL Y+N +PD++K  WNV+NW  A+  ++++
Sbjct:    4 TLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEAFQSEFEKAATTRVGSGWAWLVL--EEGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEK 205          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36
Identity = 83/203 (40.89%), Postives = 116/203 (57.14%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            TLP LPY Y ALEP    + M++HH + HQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P++G+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.373e-36
Identity = 81/203 (39.90%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP LPY  +ALEP I    M +HH + H  YVT  N A+E       +  +AL     +    ++ A++ NGGGH NH++FW+ L+P    GG  P   L  AI+A FGS +   +K +   A   GSGW WL ++    +L + +T NQD  + +  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV+NW   +  Y +
Sbjct:    5 LPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSP---NGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVNDG--KLEITSTPNQDTPLMEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVAKRYNE 200          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_EPTST (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Eptatretus stoutii PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.794e-36
Identity = 81/147 (55.10%), Postives = 98/147 (66.67%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 599
            IS EIMQLHH + H AYV N N   E+L +AL K D +T V LQ A +FNGGGH+NHSIFW+NL+P   GGG+P    L  AI+  FGS++ L +K+ A    +QGSGW WLG + E KRL + T ANQDPL      L PLLGIDV
Sbjct:    2 ISAEIMQLHHSKHHAAYVNNVNVVEEKLAEALGKGDVNTQVSLQPAFRFNGGGHINHSIFWRNLSP--SGGGQPCGDLLK-AIENDFGSVDKLREKLVAAAVGVQGSGWAWLGFNKESKRLQIATCANQDPL-QGTTGLFPLLGIDV 144          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.060e-36
Identity = 85/201 (42.29%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGA-------IKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            LP LPY Y ALEP I    M++HH + HQ YV N N A+E    A   V+ S + QL G        +  NGGGH NHS+FW  ++P  +GGG P    LG AID   G  EA     +       GSGW WL + T    L+VE++ NQD  +    T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV++W+  +  Y
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAEQPVE-SLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSP--QGGGRPD-GDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSV-TPQGSLLVESSGNQDSPLMNGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFYNVIDWREVARRY 198          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.996e-36
Identity = 83/203 (40.89%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            TLP LPY Y ALEP    + M++HH + HQ YV N N A+E L +  +      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELITKLDQVPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.996e-36
Identity = 83/203 (40.89%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            TLP LPY Y ALEP    + M++HH + HQ YV N N A+E L +  +      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELITKLDQVPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_STRAG1.052e-3640.89Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA51.052e-3640.89Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA31.052e-3640.89Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_PASHA1.052e-3641.15Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_ECOLI1.373e-3640.89Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_BACHD1.373e-3639.90Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_EPTST1.794e-3655.10Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_PSEAE3.060e-3642.29Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM_SALTY3.996e-3640.89Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI3.996e-3640.89Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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