CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:41..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 3.996e-36
Identity = 88/211 (41.71%), Postives = 118/211 (55.92%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVD-------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 707
            T  LP+L Y Y ALEP    E M++HH + HQAYV N N  +E+  + L K         T    + + A++ N GGHVNH++FWK L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ K    V   P+  +DVWEHAYYL Y+N +PDY+K  WNV+NW  AS  ++++
Sbjct:    2 TYQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVRNNLGGHVNHTLFWKGLKT-----GTTLQGALKDAIIRDFGSVEAFQAEFEQAAATRFGSGWAWLVL--EEGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEASRRFEEK 205          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.219e-36
Identity = 86/207 (41.55%), Postives = 119/207 (57.49%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNK-----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            +LP LPY Y ALEP    + M++HH + HQ YV N N            +VE L + L+KV      + +  ++ N GGH NHS+FWK L       G      L  AI+  FGS+++  +K  A  A   GSGW WL L  + K L V +TANQD PL+ +A +     P++G+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:    4 SLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLIKDLDKVPA----EKRTFMRNNAGGHANHSLFWKGLKL-----GTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKDDGK-LAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAA 200          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.219e-36
Identity = 79/203 (38.92%), Postives = 123/203 (60.59%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            + LP+LPY Y ALEP    E M LHH + H  YV N + A+E   ++ + L ++  D   + + ++ A+  NGGGH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S +YQ
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTDAALEKHPEIGENLEELLADVPKIPEDIRQALINNGGGHLNHALFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSALYQ 198          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.219e-36
Identity = 84/202 (41.58%), Postives = 124/202 (61.39%), Query Frame = 3
Query:  126 LPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LPY  +AL+PAI  + M++H+ + H+AYV N N  ++  +  L+K D   ++QLQ        A++ NGGGH NH+ FW++LA  ++ G   P  +L   I   FGSL+A  QK +   +   GSGW WL + T   +L V +T NQD PL+  + T   PLLG+DVWEHAYYL+Y+N + DY+K  W+V+NW   ++ Y +
Sbjct:   30 LPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKT-YPELDKTD---LIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNE 224          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.902e-36
Identity = 82/204 (40.20%), Postives = 115/204 (56.37%), Query Frame = 3
Query:  102 LQTVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPH----SSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            +   TLP+LPYDYSAL P IS EI++LHH + H AYV   N  +EQL +A +K    ++  L+  + F+  GH+ HSI+W N+    +GGGEP        L  AI   FGS      +++   A  QGSGW  L  +    RL+VE   +    V +  T  P+L  D WEHA+YLQYKN K D++  +W V+NW+  +  Y+
Sbjct:    1 MSVYTLPELPYDYSALAPVISPEIIELHHDKHHAAYVKGANDTLEQLAEARDKETWGSINGLEKNLAFHLSGHILHSIYWHNM--TGDGGGEPLDKDGVGELADAIAESFGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFYLQYKNQKVDFIDAMWAVVNWQDVARRYE 200          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.163e-35
Identity = 80/187 (42.78%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            LP LPY+Y+ALEP I  EIM+LHHQ+ H  YV   N A+E++ + L       V  +     FN  GH+ H+IFW N+AP  +GGG  P   +   I+  FG  E      SA    ++G GW  L  D   + L +      + L+T    LVP+L IDVWEHAYYLQYKN +  Y++N WNV+NW
Sbjct:    9 LPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGG-TPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.983e-35
Identity = 82/202 (40.59%), Postives = 117/202 (57.92%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDT--STVVQLQGAIKF----NGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            + LPDLPY Y ALEP I  E M LHH + H  YV N N A+E+  +    ++   + V Q+   I+     NGGGH+NH++FW+ L+P          + +  AI+  FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYYL Y+NV+P+Y+K  + V+NW   + +Y
Sbjct:    3 ILLPDLPYAYDALEPYIDAETMTLHHDKHHATYVANANAALEKHPEIGENLEVLLADVEQIPADIRQSLINNGGGHLNHALFWELLSPEKT----KVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.983e-35
Identity = 80/205 (39.02%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP+LPY Y ALEP I    M+ HH + H  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I A +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNNG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_PETMA (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Petromyzon marinus PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.590e-35
Identity = 81/148 (54.73%), Postives = 96/148 (64.86%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 599
            IS  IMQLHH + H  YV N N A ++L +A+ K D +  + LQ AIKFNGGGH+NHSIFW NL+P    GG  P   L  AI+  FGS   L +KMSA   A+QGSGW WLG D E  RL +   ANQDPL  +A T L+PLLGIDV
Sbjct:    2 ISANIMQLHHSKHHATYVNNLNVAEQKLAEAVAKGDVTAEIALQPAIKFNGGGHINHSIFWTNLSP---NGGGAPTGDLQKAIETDFGSFTKLQEKMSAVSVAVQGSGWGWLGYDKETGRLRIAACANQDPL--QATTGLIPLLGIDV 144          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.590e-35
Identity = 80/205 (39.02%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            LP+LPY Y ALEP I    M+ HH + H  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I A +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM_HAEDU3.996e-3641.71Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODM_YEREN5.219e-3641.55Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_STRPY5.219e-3638.92Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_ACIAD5.219e-3641.58Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODF_STRCO8.902e-3640.20Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]
SODF_AERPE1.163e-3542.78Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM_STRMU1.983e-3540.59Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM2_STAAB1.983e-3539.02Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM_PETMA2.590e-3554.73Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM2_STAAW2.590e-3539.02Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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