CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.052e-32
Identity = 79/196 (40.31%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 689
            LP+LPYDY+ALEP IS   ++ HH + H AYV N+N AV   +   Q++  V  +       A  FN      NHS +W  + P   GGG  P  +L   I+A FGS +A ++     GA   GSGW WL LD     L V  T N +  +T   T  PLL +DVWEHAYYL Y+N +PDY+ + +  ++NW + +
Sbjct:    5 LPNLPYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDLDNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKP---GGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLDN--GTLKVTKTGNAENPMTAGQT--PLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVA 193          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 79/198 (39.90%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            T  L  LPY   AL P IS E ++ HH +  + YV N NK +  +       D +T+VQ  +G I  N G  +NH++++    P   G G  P   LG AID  FGS E   ++ +  G  L GSGWVWL  D   K L +E   N    V K   L PLLG DVWEHAYYL Y+N + D+LK++W++++W      Y
Sbjct:    2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.330e-31
Identity = 76/202 (37.62%), Postives = 110/202 (54.46%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            +LPDL Y Y+ALEP    E M++HH + HQ Y+ N N  +E+        + L  +     ++ +  ++ N GGH+NHS+FWK L       G      L   I+  FGS+E    K         GSGW+WL        +V  +T NQD PL+ K+ +     P+ G+D+WEHAYYL+Y+N + DY+K+ WNV+NW  AS
Sbjct:    4 SLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSSLSIEELMSIFNEISLENKNVLRNNAGGHINHSLFWKGLKI-----GTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIV--STINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEAS 198          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.055e-31
Identity = 79/199 (39.70%), Postives = 102/199 (51.26%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL---FQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVY 698
            LP LP+DY+AL P I+ E ++ HH + H AYV NYN AV+      Q +  V  +       A  FN      NHS +W ++ P    GG  P  +L   I A FGS E  + +     A   GSGW WL LD     L +  T N D  +    T  PLL IDVWEHAYYL Y+N +PDY+   +  + NW +AS  Y
Sbjct:    5 LPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDLDGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKP---NGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLDN--GTLKITKTGNADTPIAHGQT--PLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANY 196          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ACIAM (Superoxide dismutase [Fe] OS=Acidianus ambivalens GN=sod PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.622e-31
Identity = 75/204 (36.76%), Postives = 111/204 (54.41%), Query Frame = 3
Query:  102 LQTVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            L+   LP LPY+  ALEP IS EI+ +H+   H+ YV   N  V+++ + L    +S    +QG ++   FN  GH  HS++W+N+AP  +GGG+P    +G  I+  +GS E      +    +L G+GW  L  + E   L + T  N          L  LL +D +EHAYYLQYKN + DY+ N WN++NW +A    Q+
Sbjct:    7 LKKYELPPLPYNLDALEPYISKEIIDVHYNGHHRGYVNGANSFVDRVNKILKGEISSGQYDIQGLLRGLVFNINGHKLHSLYWQNMAPAGKGGGKPG-GVIGDLIEKQYGSFEKFKALFTEAANSLPGTGWTVLYYEVENGNLQIMTFENH--FQNHIAELPILLILDEFEHAYYLQYKNKRADYVNNWWNLVNWDFADKKLQQ 207          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 73/193 (37.82%), Postives = 103/193 (53.37%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            TLP LPY   AL P IS E ++ H+ + HQ YVTN N  +         +    +V+      FN    V NH+ +W +L+P   GGGEP   +L  AI A +GS++A  +  +   A   GSGW WL    +    +V T+    PL T    L   L  DVWEHAYY+ Y+N +P YL+N W ++NW++A+
Sbjct:    4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGT--EFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNSLSP--NGGGEPS-GALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKAL---LTCDVWEHAYYIDYRNARPKYLENFWALVNWEFAA 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 72/173 (41.62%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 617
            LP LPY Y ALEP I  +  ++HH + H  YVTN N AVE    A   ++       +     Q A++ NGGGH NH++FW+ +AP   GG   P   +  AIDA FGS +A  ++ +       GSGW WL +D +   + V +T NQD  V +  T  P+LG+DVWEHAYY
Sbjct:    5 LPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFADKDINDLIAMLDALPADKQTAVRNNGGGHANHTLFWEVIAP---GGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLIVDGD--SVAVTSTPNQDSPVMEGKT--PVLGLDVWEHAYY 170          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 72/195 (36.92%), Postives = 107/195 (54.87%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            T TLP LPY   AL P +S E ++ H+ + H  YVTN NK +    F+++   +   +++ +G I  N     NH+ +W +++P   GGGEP    L  AI+  FGS  A  ++ S   A   GSGW WL  D      ++ T+    P+      L  LL  DVWEHAYY+ Y+N +PDY++  W+++NW +AS
Sbjct:    2 TFTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLIPGTEFESMTLEEI--IMKAKGGIFNNAAQVWNHTFYWHSMSP--NGGGEPK-GRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLVQDQSGALKIINTSNAGTPMTEG---LNALLTCDVWEHAYYIDYRNRRPDYIEAFWSLVNWDFAS 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 76/200 (38.00%), Postives = 108/200 (54.00%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQ----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVYQ 701
            LP+LPYDY AL P +S E ++ HH + H AYVTN NK  E+    L+ +    +V+        +  N G H NH  FWK +     GGG      L  AI +  G  +      SA GA   GSGW WL +    K  + +T   ++PLV  A    P+LG+DVWEH+YY+ Y+N +P YL+  + N++NW Y  ++Y+
Sbjct:    5 LPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEE--AGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHFWKWMK--KGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVKNG-KLEISKTPNGENPLVHGA---TPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYE 196          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SULAC (Superoxide dismutase [Fe] OS=Sulfolobus acidocaldarius GN=sod PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.277e-30
Identity = 76/204 (37.25%), Postives = 106/204 (51.96%), Query Frame = 3
Query:  102 LQTVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            L+    P LPY   ALEP IS +I+ +H+   H+ YV   N  +++L + +          LQG ++   FN  GH  H+I+W N+AP  +GGG+P   +L   I+  +GS +   Q  S    +L GSGW  L  D E   L + T  N    +     L  +L +D +EHAYYLQYKN + DYL   WNV+NW  A    QK
Sbjct:    7 LKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGKPG-GALADLINKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH--FMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQK 207          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_SYNY32.052e-3240.31Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PORGI5.971e-3239.90Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_BUCAP1.330e-3137.62Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODF_SYNE75.055e-3139.70Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_ACIAM8.622e-3136.76Superoxide dismutase [Fe] OS=Acidianus ambivalens ... [more]
SODF_BORPE1.126e-3037.82Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODM_KLEPL1.471e-3041.62Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODF_LEGPH1.471e-3036.92Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_RHIME1.921e-3038.00Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_SULAC3.277e-3037.25Superoxide dismutase [Fe] OS=Sulfolobus acidocalda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
back to top