CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.279e-30
Identity = 73/190 (38.42%), Postives = 100/190 (52.63%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQ-GAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 683
            LPDLPY  +ALEP IS E ++ HH + H+AYV   NK +E       K     +++   G I  N   H NH+ +W  ++P  +GGG+P    L  AID  FGSLE      +       GSGW WL  D   K  V+ T   ++P+        PL+  DVWEHAYY+  +N +P Y+ N W V+NW +
Sbjct:    5 LPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGT--PFEKEPLEEIIRKSDGGIFNNAAQHWNHTFYWHCMSP--DGGGDPS-GELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDF 186          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 73/192 (38.02%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   AL P IS E ++ H+ + HQ YVTN N  ++    A        +V+      FN    V NH+ +W  LAP    GGEP    L  AI A FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ +
Sbjct:    5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 73/192 (38.02%), Postives = 100/192 (52.08%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   AL P IS E ++ H+ + HQ YVTN N  ++    A        +V+      FN    V NH+ +W  LAP    GGEP    L  AI A FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ +
Sbjct:    5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.626e-29
Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   ALEP IS E ++ HH + H  YV   N  +    +  NK     V    G +  N     NH+ +W +L+P    GG  P  ++  AI+A +GS +A  + ++ +     GS W WL    +    +V T+    PL     T  P+L +D+WEHAYY+ Y+NV+PDYLK  W+++NW++A+
Sbjct:    4 LPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGT-KFENKSLEEIVCSSDGGVFNNAAQIWNHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFAN 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 75/208 (36.06%), Postives = 108/208 (51.92%), Query Frame = 3
Query:  108 TVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKA----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTK---APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            T  LP LPY Y++LEP    + M +HH R HQAY+ N N            +E+L   LN +     + LQ     N GGH+NHS+FWK L                  ++ +F S++   ++      +  GSGW+WL +      L + TT NQ+ PL+ K     + +P+LG+D+WEHAYYL+YKN + DY+   WNV+NW   S
Sbjct:    2 TYVLPSLPYSYNSLEPFFDEKTMIIHHTRHHQAYINNTNSILNGTHYENLLIEELISKLNILSIENKLALQN----NAGGHINHSLFWKWLKL-----NTILKDDFKIILEKNFKSVDFFKKQFEKIALSHFGSGWIWL-IKKYDNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYYLKYKNNRSDYVNAFWNVVNWDEVS 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_PARCL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Parastichopus californicus PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.623e-29
Identity = 70/148 (47.30%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 599
            I G+IM+LHH++ H  Y  N N A E+L  A  + D   ++ LQ A+KFNGGG +NH IFW NL+P  +GGG  P   L  AI+  FGS ++    ++A   A+QGSGW WLG D +   L + T  NQDPL  +A T +VPL GIDV
Sbjct:    2 IIGDIMELHHKKHHATYTNNLNAAEEKLAAAHAEGDIGGMIALQPALKFNGGGFINHCIFWTNLSP--QGGG-VPEGDLADAINRDFGSFDSFKTTLTAATVAIQGSGWGWLGFDPKTHHLKIATCVNQDPL--QATTGMVPLFGIDV 144          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SULSO (Superoxide dismutase [Fe] OS=Sulfolobus solfataricus GN=sod PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.623e-29
Identity = 73/199 (36.68%), Postives = 107/199 (53.77%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP LPY   ALEP IS +I+ +H+   H+ YV   N  +E+L + +     +    +QG I+   FN  GH  H+++W+N+AP  +GGG+P   +L   I+  +GS +   Q  +    +L G+GW  L  DTE   L + T  N          +  +L +D +EHAYYLQYKN + DY+   WNV+NW  A    QK
Sbjct:   12 LPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLLERLEKVVKGDLQTGQYDIQGIIRGLTFNINGHKLHALYWENMAPSGKGGGKPG-GALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDTESGNLQIMTFENH--FQNHIAEIPIILILDEFEHAYYLQYKNKRADYVNAWWNVVNWDAAEKKLQK 207          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 71/192 (36.98%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   AL P IS E ++ H+ + HQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI A FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 71/192 (36.98%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   AL P IS E ++ H+ + HQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI A FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 71/192 (36.98%), Postives = 101/192 (52.60%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LPY   AL P IS E ++ H+ + HQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI A FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGT--AFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_COXBU4.279e-3038.42Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_SALTY1.245e-2938.02Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI1.245e-2938.02Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_PSEHT1.626e-2935.60Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODM_BUCBP2.124e-2936.06Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_PARCL3.623e-2947.30Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_SULSO3.623e-2936.68Superoxide dismutase [Fe] OS=Sulfolobus solfataric... [more]
SODF_SHIFL4.731e-2936.98Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI4.731e-2936.98Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL64.731e-2936.98Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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