CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            +TLP L Y  +AL P IS E +  H+ + H  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            +TLP L Y  +AL P IS E +  H+ + H  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_HALMA (Superoxide dismutase [Mn] OS=Haloarcula marismortui GN=sod PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 71/196 (36.22%), Postives = 96/196 (48.98%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP LPYDY ALEP IS +++  HH   HQ YV     A E L +  +  D  +     G +  NG GH  H++FW+N+ P   GGGEP    L   I+  FGS E    K   E AA    GW  L  D   K+L        D          P+L +DVWEH+YY  Y   + D++   + V++W  A++ Y+K
Sbjct:    9 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGLESAEETLAENRDAGDFGSSAAAMGNVTHNGCGHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYEG--WKGEFEAAASAAGGWALLVYDPVAKQLRNVPVDKHDQGALWGSH--PILALDVWEHSYYYDYGPARGDFIDAFFEVVDWDKAAEEYEK 197          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 70/195 (35.90%), Postives = 101/195 (51.79%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYN---KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 692
            LP LPY Y+ALEP IS E ++ HH + H  YV   N   K  EQ  + L ++      Q   AI  N     NH+ +WK +     G G  P   L   + A FG LE   +K + +     GSGW WL ++ + K  +++T    +P+      + PLL  DVWEHAYY+  +N +  YL++ WNV+NWK+  +
Sbjct:    5 LPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTEQEHKTLEELIKQKPTQ---AIYNNAAQAWNHAFYWKCMC----GCGVKPSEQLIAKLTAAFGGLEEFKKKFTEKAVGHFGSGWCWL-VEHDGKLEIIDTHDAVNPMTNG---MKPLLTCDVWEHAYYIDTRNNRAAYLEHWWNVVNWKFVEE 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM1_HALSA (Superoxide dismutase [Mn] 1 OS=Halobacterium salinarium GN=sod1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 66/196 (33.67%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            LP LPYDY ALEP IS +++  HH   HQ YV  +N A E L +     D ++     G +  NG GH+ H++FW++++P    GG+ P  +L   I A FGS E    +   E AA   SGW  L  D+    L      N D          P+L +DVWEH+YY  Y   +  ++   + V++W   ++ +++
Sbjct:    6 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGWNDAEETLAENRETGDHASTAGALGDVTHNGSGHILHTLFWQSMSP---AGGDEPSGALADRIAADFGSYEN--WRAEFEAAASAASGWALLVYDSHSNTLRNVAVDNHDEGALWGSH--PILALDVWEHSYYYDYGPDRGSFVDAFFEVVDWDEPTERFEQ 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.896e-26
Identity = 71/198 (35.86%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692
            LPDLPY+  + +P  + E    HH + H  YV N N  ++   + L K D   ++    Q   A  FN    + NH+ FW ++ P  +GGG+P    L   I+  FGS E   ++   E     GSGW WL       RL +  TAN    +  A  + PLL  DVWEHAYY+ Y+N +PDY+   I +++NWK+  D
Sbjct:   16 LPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDK-EELQKKDLEEIIEWSSQNSNAAIFNNAAQIWNHTFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIYHDN--RLQIIKTANAGTPI--AHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.896e-26
Identity = 67/198 (33.84%), Postives = 103/198 (52.02%), Query Frame = 3
Query:  111 VTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            +TLP L Y  +AL P IS E +  H+ + H  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAY + Y+N +  Y+K  WN++NW +A++  +K
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGEP-HGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYCIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 69/198 (34.85%), Postives = 102/198 (51.52%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692
            LP+LPY+  + +P  + E  + HH + H AYV N N  ++   + L K +   ++    Q Q    FN    V NH+ FW ++ P   GGG+P    L   I+  FGS E   ++  AE     GSGW WL       RL +  TAN    +     + PLL  DVWEHAYY+ Y+N +PDY+   I +++NW++  +
Sbjct:   16 LPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDK-EELQKKNLEEIIDWSSQNQNIAIFNNAAQVWNHTFFWHSIKP--NGGGKPSGKILK-QINEDFGSFEEFCEQFKAEATGQFGSGWAWLVYHNN--RLQIVKTANAGTPIANG--MQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVEN 205          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 66/192 (34.38%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 689
            LP LP+  +ALEP IS E ++ H+ + H  YV   N  VE    A   ++        G   FN    V NH+ +W  LAP    GGEP    +  AI+  FGS      K +       GS W WL  +      +V T+    P+  +  T  PLL +D+WEHAYY+ Y+N++P Y+   W ++NW + S
Sbjct:    4 LPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEGTELAEKSLEEIIKTSTGGV--FNNAAQVWNHTFYWNCLAP--NAGGEPT-GEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLVKNANGSLAIVNTSNAGCPITEEGVT--PLLTVDLWEHAYYIDYRNLRPSYMDGFWALVNWDFVS 188          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 71/199 (35.68%), Postives = 105/199 (52.76%), Query Frame = 3
Query:  126 LPYDYSALEP-AISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVYQK 704
            LPYD++ALE   + GE  + H+ + H+AYV N NK  +    A   ++    +  + A K   FN    V NH+ FW +L P    GG  P       I+  FGS + L ++ S   A   GSGW WL +D      V +T   ++PL   A     LL +DVWEHAYY+ ++N +P ++KN + N++NW +A+  Y K
Sbjct:    8 LPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPA---GGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWL-IDDGGTLKVTKTPNAENPL---AHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAK 199          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_PLAFA4.428e-2734.34Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF74.428e-2734.34Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODM_HALMA7.554e-2736.22Superoxide dismutase [Mn] OS=Haloarcula marismortu... [more]
SODF_ENTHI1.288e-2635.90Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODM1_HALSA1.683e-2633.67Superoxide dismutase [Mn] 1 OS=Halobacterium salin... [more]
SODF_RICCN4.896e-2635.86Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_PLAMA4.896e-2633.84Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODF_RICBR8.352e-2634.85Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_PHOLE3.174e-2534.38Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_ANASP3.174e-2535.68Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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