CN188801
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM2_HALSA (Superoxide dismutase [Mn] 2 OS=Halobacterium salinarium GN=sod2 PE=3 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25 Identity = 69/187 (36.90%), Postives = 96/187 (51.34%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677 LP LPYDY ALEP IS +++ HH HQ+YV N A E L + D ++ G + NG GH H++FW++++P +GGGE P +L I A FGS E + E AA SGW L D K+L N D P+L +DVWEH+YY Y + ++ + V++W Sbjct: 6 LPSLPYDYDALEPHISEQVVTWHHDTHHQSYVDGLNSAEETLAENRETGDHASTAGALGDVTHNGCGHYLHTMFWEHMSP--DGGGE-PSGALADRIAADFGSYEN--WRAEFEVAAGAASGWALLVYDPVAKQLRNVAVDNHDEGALWGSH--PILALDVWEHSYYYDYGPDRGSFVDAFFEVIDW 185
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25 Identity = 72/193 (37.31%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 129 PYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAI--KFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW-NVMNWKYAS 689 PY ALEP +S + H + H+AYV N NK ++ D V +GA FN NH FW+++ P GGGEP L I+ FGS +A +++ A A GSGW WL E K+L + T N ++PLV PLL IDVWEHAYYL ++N +PDY+ +++W+ S Sbjct: 8 PYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTELDGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKP--NGGGEPSGELLE-LINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVLG---YTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVS 194
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25 Identity = 75/198 (37.88%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 114 TLPDLPYDYSALEP-AISGEIMQLHHQRRHQAYVTNYNKAVEQLFQ---ALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 689 T P LP+ ALEP + E H+ + H AYVTN NK VE +L V + FN V NH+ FW L GGG P L IDA FGSL+ ++ S A GSGW WL +D V +T ++PLV PLL +DVWEHAYYL ++N +P ++KN + N++NW + + Sbjct: 4 TQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPMESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKA---GGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWL-VDDGGTLKVTKTPNAENPLVHGQK---PLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVA 194
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24 Identity = 65/198 (32.83%), Postives = 101/198 (51.01%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692 LPDLPYD + +P + E HH + H +YV N N ++ + L K D +++ + AI N NH+ FW ++ P GGG+ P + I FGS E + E GSGW W+ + + K +++T+ P+V + P+L DVWEHAYY+ Y+N + DY+ I +++NWK+ D Sbjct: 16 LPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDR-EELQKKDLEEIIEWSSQNAEVAILNNASQIWNHTFFWYSIKP--HGGGK-PSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWV-VYHDNKLQIIKTSNAGTPIVN---FMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVED 205
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23 Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG----AIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692 LPDLPY + +P + E HH + H +YV N N ++ + L K D +++ FN + NH+ FW ++ P GGG+P + I FGS E ++ E GSGWVW+ + K +++T+ P+V + P+L DVWEHAYY+ Y+N + DY+ I +++NWK+ D Sbjct: 16 LPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDR-EELQKKDLEGIIKWSSKNSEVTVFNNASQIWNHTFFWYSIKP--HGGGKPS-GKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVED 205
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.741e-23 Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 L LPYD +A +S E HH + H YVTN N ++ + D ++++ FN V NH ++ + P+ G + ++L A++ FGSLE + + GSGW WL +T+ ++L T+N +T+ VPLL +DVWEHAYY+ ++N +P YL+ + +NW++ + Y+ Sbjct: 4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK--YTEFASKDLVSIIKSSSGGVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4) HSP 1 Score: 108.612 bits (270), Expect = 3.879e-23 Identity = 69/192 (35.94%), Postives = 99/192 (51.56%), Query Frame = 3 Query: 129 PYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 689 P+ ALEP +S + ++ H + H+AYV N K V E + L + ST FN NH FW+++ P GGG P L ++ F S E ++ +A A G+GW WL E K VV+T +PLV + PLL IDVWEHAYYL ++N +PDY+K + N+++W+ S Sbjct: 17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.067e-23 Identity = 61/198 (30.81%), Postives = 98/198 (49.49%), Query Frame = 3 Query: 114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 TL +LP+ ++ +S HH + HQ YV N N ++ F+ + D T + G + N NH +W L+P + L A++ FGSLE + L GSGW W + + +++ +++T+ Q P+ K VPLL +DVWEHAYY+ +KN +P YL+ + +NW + S Y+ Sbjct: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILT--KSSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWHFVSQCYE 191
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM2_HALVO (Superoxide dismutase [Mn] 2 OS=Halobacterium volcanii GN=sod2 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23 Identity = 66/198 (33.33%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704 L LPY+Y ALEP IS +++ HH HQ YV +N E L + + + + NG GH+ H +FW+N++P GG+ P L I FGS EA K E AA +GW L D+ +L VV +Q L P+L +DVWEH+YY Y + D++ + V++W + Y++ Sbjct: 5 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETLAENREAGEFGSSAGAVRNVTHNGSGHILHDLFWQNMSP---EGGDEPEGLLAERIAEDFGSYEA--WKGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSH----PILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 193
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM1_HALVO (Superoxide dismutase [Mn] 1 OS=Halobacterium volcanii GN=sod1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23 Identity = 66/198 (33.33%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704 L LPY+Y ALEP IS +++ HH HQ YV +N E L + + + + NG GH+ H +FW+N++P GG+ P L I FGS EA K E AA +GW L D+ +L VV +Q L P+L +DVWEH+YY Y + D++ + V++W + Y++ Sbjct: 6 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETLAENREAGEFGSSAGAVRNVTHNGSGHILHDLFWQNMSP---EGGDEPEGLLAERIAEDFGSYEA--WKGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSH----PILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 194 The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 225
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bpback to top |