CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM2_HALSA (Superoxide dismutase [Mn] 2 OS=Halobacterium salinarium GN=sod2 PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 69/187 (36.90%), Postives = 96/187 (51.34%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 677
            LP LPYDY ALEP IS +++  HH   HQ+YV   N A E L +     D ++     G +  NG GH  H++FW++++P  +GGGE P  +L   I A FGS E    +   E AA   SGW  L  D   K+L      N D          P+L +DVWEH+YY  Y   +  ++   + V++W
Sbjct:    6 LPSLPYDYDALEPHISEQVVTWHHDTHHQSYVDGLNSAEETLAENRETGDHASTAGALGDVTHNGCGHYLHTMFWEHMSP--DGGGE-PSGALADRIAADFGSYEN--WRAEFEVAAGAASGWALLVYDPVAKQLRNVAVDNHDEGALWGSH--PILALDVWEHSYYYDYGPDRGSFVDAFFEVIDW 185          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 72/193 (37.31%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  129 PYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAI--KFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW-NVMNWKYAS 689
            PY   ALEP +S    + H  + H+AYV N NK ++          D   V   +GA    FN      NH  FW+++ P   GGGEP    L   I+  FGS +A +++  A  A   GSGW WL    E K+L +  T N ++PLV       PLL IDVWEHAYYL ++N +PDY+      +++W+  S
Sbjct:    8 PYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTELDGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKP--NGGGEPSGELLE-LINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVLG---YTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVS 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 75/198 (37.88%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  114 TLPDLPYDYSALEP-AISGEIMQLHHQRRHQAYVTNYNKAVEQLFQ---ALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 689
            T P LP+   ALEP  +  E    H+ + H AYVTN NK VE       +L  V   +         FN    V NH+ FW  L     GGG  P   L   IDA FGSL+   ++ S   A   GSGW WL +D      V +T   ++PLV       PLL +DVWEHAYYL ++N +P ++KN + N++NW + +
Sbjct:    4 TQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPMESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKA---GGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWL-VDDGGTLKVTKTPNAENPLVHGQK---PLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVA 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 65/198 (32.83%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692
            LPDLPYD  + +P  + E    HH + H +YV N N  ++   + L K D   +++      + AI  N     NH+ FW ++ P   GGG+ P   +   I   FGS E    +   E     GSGW W+ +  + K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   I +++NWK+  D
Sbjct:   16 LPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDR-EELQKKDLEEIIEWSSQNAEVAILNNASQIWNHTFFWYSIKP--HGGGK-PSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWV-VYHDNKLQIIKTSNAGTPIVN---FMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVED 205          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG----AIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 692
            LPDLPY   + +P  + E    HH + H +YV N N  ++   + L K D   +++          FN    + NH+ FW ++ P   GGG+P    +   I   FGS E   ++   E     GSGWVW+  +   K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   I +++NWK+  D
Sbjct:   16 LPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDR-EELQKKDLEGIIKWSSKNSEVTVFNNASQIWNHTFFWYSIKP--HGGGKPS-GKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVED 205          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.741e-23
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            L  LPYD +A    +S E    HH + H  YVTN N  ++  +      D  ++++      FN    V NH  ++  + P+      G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK--YTEFASKDLVSIIKSSSGGVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 108.612 bits (270), Expect = 3.879e-23
Identity = 69/192 (35.94%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  129 PYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 689
            P+   ALEP +S + ++ H  + H+AYV N  K V   E   + L  +  ST         FN      NH  FW+++ P   GGG  P   L   ++  F S E   ++ +A  A   G+GW WL    E K  VV+T    +PLV  +    PLL IDVWEHAYYL ++N +PDY+K  + N+++W+  S
Sbjct:   17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.067e-23
Identity = 61/198 (30.81%), Postives = 98/198 (49.49%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            TL +LP+   ++   +S      HH + HQ YV N N  ++   F+  +  D  T  +  G +  N     NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:    3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILT--KSSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWHFVSQCYE 191          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM2_HALVO (Superoxide dismutase [Mn] 2 OS=Halobacterium volcanii GN=sod2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23
Identity = 66/198 (33.33%), Postives = 97/198 (48.99%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            L  LPY+Y ALEP IS +++  HH   HQ YV  +N   E L +     +  +       +  NG GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L        P+L +DVWEH+YY  Y   + D++   + V++W   +  Y++
Sbjct:    5 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETLAENREAGEFGSSAGAVRNVTHNGSGHILHDLFWQNMSP---EGGDEPEGLLAERIAEDFGSYEA--WKGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSH----PILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 193          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM1_HALVO (Superoxide dismutase [Mn] 1 OS=Halobacterium volcanii GN=sod1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23
Identity = 66/198 (33.33%), Postives = 97/198 (48.99%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            L  LPY+Y ALEP IS +++  HH   HQ YV  +N   E L +     +  +       +  NG GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L        P+L +DVWEH+YY  Y   + D++   + V++W   +  Y++
Sbjct:    6 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETLAENREAGEFGSSAGAVRNVTHNGSGHILHDLFWQNMSP---EGGDEPEGLLAERIAEDFGSYEA--WKGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSH----PILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 194          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODM2_HALSA5.413e-2536.90Superoxide dismutase [Mn] 2 OS=Halobacterium salin... [more]
SODF_NICPL5.413e-2537.31Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_PLEBO9.234e-2537.88Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_RICPR3.509e-2432.83Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_RICTY1.333e-2332.32Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_CAMCO1.741e-2330.50Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODF_ARATH3.879e-2335.94Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_HELPY5.067e-2330.81Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODM2_HALVO6.617e-2333.33Superoxide dismutase [Mn] 2 OS=Halobacterium volca... [more]
SODM1_HALVO6.617e-2333.33Superoxide dismutase [Mn] 1 OS=Halobacterium volca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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