CN188801
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23 Identity = 71/207 (34.30%), Postives = 99/207 (47.83%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL----QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP*AWS 725 LP LPY L P IS E + H+ + H YV N ++ +++ T+ +L GA+ N NH+ +W ++ P GGEP + I+ FGS A S A GSGW WL L + +V+T PL K PLL DVWEHAYY+ YKN + Y+ + WN++NW +A+ E P WS Sbjct: 5 LPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKG-----TPLESCTIEELILGQTGAVFNNAAQIWNHTFYWNSMGP--NCGGEPT-GPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWNLVNWDFANK--NLEAPFKWS 199
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCMA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium malmoense GN=sodA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.129e-22 Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 3 Query: 183 HHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 611 HH + H AYV N AV +L +A K D S + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG D+ +L+ +Q V ++PLL +D+WEHA Sbjct: 1 HHSKHHAAYVKGVNDAVAKLEEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLASAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDSLGDKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22 Identity = 62/204 (30.39%), Postives = 96/204 (47.06%), Query Frame = 3 Query: 114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 TL +LP+ ++ +S HH + HQ YV N N ++ LF L K G + N NH +W L+P + L A++ FGSLE + L GSGW W + + +++ +++T+ Q P+ K VPLL +DVWEHAYY+ +KN +P YL+ + +NW + S Y+ Sbjct: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSS--------GGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHVNWHFVSQCYE 191
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22 Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 L LPYD +A +S E HH + H YVTN N ++ A D ++++ FN V NH ++ + P G + ++L A++ FGSLE + + GSGW WL +T+ ++L T+N +T+ VPLL +DVWEHAYY+ ++N +P YL+ + +NW++ + Y+ Sbjct: 4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGK--DLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22 Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 3 Query: 117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701 L LPYD +A +S E HH + H YVTN N ++ A D ++++ FN V NH ++ + P G + ++L A++ FGSLE + + GSGW WL +T+ ++L T+N +T+ VPLL +DVWEHAYY+ ++N +P YL+ + +NW++ + Y+ Sbjct: 4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGK--DLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCCH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium chelonae GN=sodA PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22 Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3 Query: 186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 611 H + H AYV N AV +L +A K D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + +A LQGSGW LG D+ ++L+ +Q V ++PLL +D+WEHA Sbjct: 2 HSKHHAAYVAGVNSAVAKLEEAREKGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCCE (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium celatum GN=sodA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.780e-21 Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 3 Query: 183 HHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD---PLVTKAPTLVPLLGIDVWEHA 611 HH + H YV N A+E+L +A K D STV+ + + FN GHVNH+I+WKNL+P GG+ P L AID FGS + + A +QGSGW LG D ++L++ + PL +VPLL +D+WEHA Sbjct: 1 HHSKHHATYVKGANDALEKLEEARAKDDQSTVLLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDKFRAQFHAAATTVQGSGWAALGWDNLGEKLLIFQVYDHQSNFPL-----GVVPLLLLDMWEHA 138
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCMR (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium marinum GN=sodA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21 Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 3 Query: 186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 611 H + H YV N AV +L +A K D ST++ + + FN GHVNH+I+WKNL+P GG+ P L AID FGS + + A +QGSGW LG DT +L++ + T P +VPLL +D+WEHA Sbjct: 2 HSKHHATYVKGANDAVTKLEEARAKEDHSTILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21 Identity = 65/196 (33.16%), Postives = 99/196 (50.51%), Query Frame = 3 Query: 117 LPDLPYDYSALEP-AISGEIMQLHHQRRHQAYVTNYNKAV---EQLFQALNKVDTSTVVQ---LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWK 680 LP LPY + AL +S E ++ HH H+AYV N NK + E +++ ++ T Q I N H NH+ FW+ + P G + +L A+ FGS+ + +A GA GSGW WL D++ + +T +PL L LG DVWEH+YY+ ++N +P YL N + ++NW+ Sbjct: 5 LPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTEWEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGP---GEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLVKDSDGALKITKTENGVNPLCFGQTAL---LGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWE 194
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20 Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 3 Query: 186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 611 H + H YV N AV +L +A + D S+++ + + FN GHVNH+I+WKNL+P GG+ P L AID FGS + + A +QGSGW LG DT +L++ + T P +VPLL +D+WEHA Sbjct: 2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHAASTTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138 The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 225
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bpback to top |