CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 71/207 (34.30%), Postives = 99/207 (47.83%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQL----QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKECP*AWS 725
            LP LPY    L P IS E +  H+ + H  YV   N  ++        +++ T+ +L     GA+  N     NH+ +W ++ P    GGEP    +   I+  FGS  A     S   A   GSGW WL L  +    +V+T     PL  K     PLL  DVWEHAYY+ YKN +  Y+ + WN++NW +A+     E P  WS
Sbjct:    5 LPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKG-----TPLESCTIEELILGQTGAVFNNAAQIWNHTFYWNSMGP--NCGGEPT-GPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWNLVNWDFANK--NLEAPFKWS 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCMA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium malmoense GN=sodA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.129e-22
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  183 HHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 611
            HH + H AYV   N AV +L +A  K D S +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG D+   +L+     +Q   V     ++PLL +D+WEHA
Sbjct:    1 HHSKHHAAYVKGVNDAVAKLEEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLASAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDSLGDKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 62/204 (30.39%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  114 TLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            TL +LP+   ++   +S      HH + HQ YV N N  ++        LF  L K          G +  N     NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:    3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTKSS--------GGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHVNWHFVSQCYE 191          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            L  LPYD +A    +S E    HH + H  YVTN N  ++    A    D  ++++      FN    V NH  ++  + P       G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGK--DLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.925e-22
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  117 LPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 701
            L  LPYD +A    +S E    HH + H  YVTN N  ++    A    D  ++++      FN    V NH  ++  + P       G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFAGK--DLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCCH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium chelonae GN=sodA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 611
            H + H AYV   N AV +L +A  K D + +   +  + F+ GGHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+  ++L+     +Q   V     ++PLL +D+WEHA
Sbjct:    2 HSKHHAAYVAGVNSAVAKLEEAREKGDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCCE (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium celatum GN=sodA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.780e-21
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  183 HHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD---PLVTKAPTLVPLLGIDVWEHA 611
            HH + H  YV   N A+E+L +A  K D STV+  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG D   ++L++    +     PL      +VPLL +D+WEHA
Sbjct:    1 HHSKHHATYVKGANDALEKLEEARAKDDQSTVLLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDKFRAQFHAAATTVQGSGWAALGWDNLGEKLLIFQVYDHQSNFPL-----GVVPLLLLDMWEHA 138          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCMR (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium marinum GN=sodA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21
Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 611
            H + H  YV   N AV +L +A  K D ST++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:    2 HSKHHATYVKGANDAVTKLEEARAKEDHSTILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 65/196 (33.16%), Postives = 99/196 (50.51%), Query Frame = 3
Query:  117 LPDLPYDYSALEP-AISGEIMQLHHQRRHQAYVTNYNKAV---EQLFQALNKVDTSTVVQ---LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWK 680
            LP LPY + AL    +S E ++ HH   H+AYV N NK +   E   +++ ++   T       Q  I  N   H NH+ FW+ + P   G  +    +L  A+   FGS+    +  +A GA   GSGW WL  D++    + +T    +PL      L   LG DVWEH+YY+ ++N +P YL N  + ++NW+
Sbjct:    5 LPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTEWEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGP---GEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLVKDSDGALKITKTENGVNPLCFGQTAL---LGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWE 194          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 611
            H + H  YV   N AV +L +A  + D S+++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:    2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHAASTTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_BABBO8.642e-2334.30Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODM_MYCMA1.129e-2241.96Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_HELPJ1.925e-2230.39Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODF_CAMJJ1.925e-2231.00Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE1.925e-2231.00Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODM_MYCCH5.602e-2240.14Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCCE2.780e-2140.41Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCMR4.742e-2140.56Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_RHOCA8.089e-2133.16Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODM_MYCSZ2.354e-2039.16Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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