CN188801

Overview
NameCN188801
Unique NameCN188801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.074e-20
Identity = 67/221 (30.32%), Postives = 102/221 (46.15%), Query Frame = 3
Query:   48 GIRKAIGLGKSVRLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQRRHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGL----------------DTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYL 650
            G++   G+   ++ G +      L   PY  + LEP +S + ++ H  + H+ YV N  K V   E   ++L ++  ++  +      FN    V NH  FW+ + P   GGG  P   L   I+  FGS    + +  A  A   GSGW WL                  D + K +V+++    +PLV       PLL IDVWEHAYYL ++N +PDY+
Sbjct:    6 GLQNVSGINFLIKEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKP---GGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDEDNKLVVLKSPNAVNPLVWGG--YYPLLTIDVWEHAYYLDFQNRRPDYI 221          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_MYCPH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium phlei GN=sodA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.848e-20
Identity = 55/142 (38.73%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  186 HQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 611
            H + H  YV   N A+ +L +A    D   +   +  + F+ GGHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA
Sbjct:    2 HSKHHATYVKGVNDAIAKLEEARANGDHGAIFLHEKNLAFHLGGHVNHTIWWKNLSP---HGGDKPTGDLAAAIDDQFGSFDNFRAQFTAAANGLQGSGWAVLGYDTLGDRLLTFQLYDQQANVPLG--IIPLLLVDMWEHA 138          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STROR (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus oralis GN=sodA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 593
            I  E M LHH + HQAYV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AIDA FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:    2 IDAETMHLHHDKHHQAYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRMT (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus mitis GN=sodA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 57/151 (37.75%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 593
            I  E M LHH + HQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AIDA FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:    2 IDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRPA (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus parasanguis GN=sodA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.093e-17
Identity = 58/152 (38.16%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 593
            I  E M LHH + HQ YV N N A+E+       L   L  V+ S    ++ A+  NGGGH+NH++FW+ + P        P + L  AIDA FGS E      +A      GSGW W  ++ E K L V +TANQD  +++  T  P+LG+
Sbjct:    2 IDEETMHLHHDKHHQTYVNNVNAALEKHPEIGEDLESLLADVE-SIPADIRQAVINNGGGHLNHALFWELMTPEQTA----PSAELAAAIDATFGSFEDFKAAFTAAATTRFGSGWAWSVVNKEGK-LEVTSTANQDTPLSEGKT--PILGL 145          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_AQUAE (Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=sodB PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.426e-17
Identity = 63/189 (33.33%), Postives = 93/189 (49.21%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            IS E ++ H +  ++ YV  YN+  E+L    N  D S   Q       L+    FN  G V H +++  LAP   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY+ YKN +P Y+   +  +NW   ++ ++K
Sbjct:   20 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQ-NFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLAP---GGKGEPSEALKKKIEEDLGGLDACTNELKA--AAIAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFEK 200          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODF_AQUPY (Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN=sodB PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 62/189 (32.80%), Postives = 92/189 (48.68%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            IS E ++ H +  ++ YV  YN+  E+L    N  D S   Q       L+    FN  G V H +++  L P   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY+ YKN +P Y+   +  +NW   ++ ++K
Sbjct:   20 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQ-NFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLTP---GGKGEPSEALKKKIEEDIGGLDACTNELKA--AAMAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFEK 200          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRSL (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus salivarius GN=sodA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 54/147 (36.73%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  159 ISGEIMQLHHQRRHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVT--KAPTL 575
            I  E M LHH + H  YV N N A+E+        +AL          ++ A+  NGGGH+NH++FW+ L+P  +     P + +  AI+  FGS EA  +  +A      GSGW WL ++ E K L V +TANQD  ++  K P L
Sbjct:    2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVEQIPADIRQALINNGGGHLNHALFWELLSPEKQ----EPTAEVAAAINEAFGSFEAFQEAFTAAATTRFGSGWAWLVVNDEGK-LEVVSTANQDTPISDGKKPIL 143          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRPO (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus porcinus GN=sodA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 53/148 (35.81%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  168 EIMQLHHQRRHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 593
            E M LHH + H  YV N N A+E   ++ + L ++  D S + + ++ A+  NGGGH+NH++FW+ L+P          S +  AID  FGS E+     +    +  GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:    5 ETMILHHDKHHATYVANANAALEKHPEIGENLEELLADVSAIPEDIRQALVNNGGGHLNHALFWELLSPEKT----EVTSDVASAIDEAFGSFESFKDAFTTAATSRFGSGWAWLVVNKEGK-LEVMSTANQDTPISEGKQ--PILGL 145          
BLAST of CN188801 vs. ExPASy Swiss-Prot
Match: SODM_STRCB (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus canis GN=sodA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 49/139 (35.25%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  168 EIMQLHHQRRHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDAHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 563
            E M LHH + H  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P  +       + +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++
Sbjct:    5 ETMTLHHDKHHATYVANANAALEKHPEIGENLKELLADV-TKIPADIRQALINNGGGHLNHALFWELLSPEKQ----EITADVAQAIDEAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISE 137          
The following BLAST results are available for this feature:
BLAST of CN188801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SODF_SOYBN3.074e-2030.32Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODM_MYCPH6.848e-2038.73Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_STROR1.291e-1838.41Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRMT3.758e-1837.75Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRPA1.093e-1738.16Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_AQUAE5.426e-1733.33Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=s... [more]
SODF_AQUPY1.579e-1632.80Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN... [more]
SODM_STRSL5.999e-1636.73Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRPO3.888e-1535.81Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRCB6.633e-1535.25Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188801 ID=CN188801; Name=CN188801; organism=Citrus sinensis; type=EST; length=773bp
ACGATCAGAACGTCACCGTTTCATTCGCGATGGCTCTCCCCCCTTTTGGC
ATCAGAAAAGCTATAGGCTTGGGTAAATCCGTCCGATTAGGGCTGCGTGG
ACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGCGCTTTGG
AGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAGGCGTCAC
CAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTTTTCAAGC
TTTGAACAAAGTCGATACGTCCACCGTCGTCCAGTTGCAGGGCGCTATCA
AGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTT
GCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCCTTGGTTG
GGCTATTGACGCGCATTTTGGTTCTCTGGAAGCATTGATACAAAAGATGA
GTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCTTGGTTTG
GATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATCAGGATCC
GCTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATAGATGTTT
GGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGATTATCTG
AAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATGTGTATCA
GAAAGAATGCCCTTAAGCTTGGAGCTCTTCCTTGAGCATGGAGTTCTTCG
TTTGATCTGGGTTCTCTCTTGGG
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