CN181929

Overview
NameCN181929
Unique NameCN181929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181929_ssr217 microsatellite CN181929_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1541 contig Csv1_Contig1541:31..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 3.538e-82
Identity = 152/189 (80.42%), Postives = 162/189 (85.71%), Query Frame = 3
Query:   81 VSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 647
            +SKLRGK+              NWLQVGDDLNHRNL D AKK+GD+ LLRMGQRNLVVVSSPD  KEVL TQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R  WE EAA VVEDVKK+P++AT GIVLR+RLQLMMYNNM+RIMFDRRFES+DDPLF RLKALNG
Sbjct:   23 ISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNREGWEFEAASVVEDVKKNPDSATKGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFLRLKALNG 211          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.294e-81
Identity = 148/191 (77.49%), Postives = 165/191 (86.39%), Query Frame = 3
Query:   75 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 647
            IT+SKLRGK               NWLQVGDDLNHRNL+DLAK++ ++LLLRM QRNLVV+SSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQD+VFTVYGEHWRKMRRIMTVPFFTNKVVQQ RF WE EAA VV+DVKK+ +A+ NGIV+RRRLQLMMYN MYRIMFDRRFES++DPLF +LKALNG
Sbjct:   21 ITISKLRGKPFKLPPGPFPVPVFGNWLQVGDDLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDIVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVKKNSKASVNGIVIRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNG 211          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.246e-79
Identity = 144/191 (75.39%), Postives = 160/191 (83.77%), Query Frame = 3
Query:   75 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 647
            +T+SKLRGKR               WLQVGDDLNHRNL+D AK++G++ LLRMGQRNLVVVSSP+ AKEVLHTQ VEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE EA  VV DVK + EA+  GIV+R+RLQLMMYN MYRIMFDRRFES++DPLF +LKALNG
Sbjct:   21 VTISKLRGKRFKLPPGPIPVPIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDVKNNAEASVGGIVIRKRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNG 211          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 8.158e-79
Identity = 149/191 (78.01%), Postives = 163/191 (85.34%), Query Frame = 3
Query:   75 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 647
            IT+SKLRGKR              NWLQVGDDLNHRNL+DLAK++GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYG    +MRRIMTVPFFTNKVVQQ RF WE EA  VV+DVKK+PEA ++GIVLRRRLQLMMYN MYRIMFDRRFES++DPLF +LKALNG
Sbjct:   21 ITISKLRGKRFKLPPGPIPVPVFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGT-LAEMRRIMTVPFFTNKVVQQYRFGWEFEAQSVVDDVKKNPEACSSGIVLRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNG 210          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.149e-18
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3
Query:  177 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD 611
            HR L +LA+KYG +L LR G    VVVSS + AK  L T  + F SR    V   F    +D+ F+ YG+HWRKMR+I  +   T+K ++  +   ++E + ++  + ++ E+    + + + +   + N ++RI+  ++F   D
Sbjct:   63 HRTLKNLAEKYGPILFLRFGSVPTVVVSSSEKAKHFLKTHDLIFASRPPTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTSKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSKAISTSLANILWRILARKKFSDND 207          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 47/146 (32.19%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  177 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 614
            HR L DLAKKYG ++ L++G+   ++VSS ++AKEV+ T  V F SR R++  DI      D+ F+ YG++WR++R+I  V   + K VQ      E+E   +++ +  +  +  N   L + +  +++    R  F +R+  Q++
Sbjct:   41 HRKLRDLAKKYGPLMHLQLGEVIFIIVSSAEYAKEVMKTHDVTFASRPRSLFTDIVFYGSTDIGFSPYGDYWRQVRKICNVELLSMKRVQSLWPIREEEVKNLIQRIASEEGSVVN---LSQAIDSLIFTITSRSAFGKRYMEQEE 183          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.879e-17
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  198 AKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKD---PEAATNGIVLRRRLQLMMYNNMYRIMFDRRF 599
            A+ YG ++ + +G    VVVSS + AKEVL     +   R RN   + F+  GQD+++  YG H+ K+R++ T+  FT K ++  R   EDE   +VE V +D   PE    G+ LR+ L  + +NN+ R+ F +RF
Sbjct:   55 AQSYGPIISVWIGSILNVVVSSAELAKEVLKEHDQKLADRHRNRSTEAFSRNGQDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTAMVESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRF 191          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: C71AO_ARATH (Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=CYP71A24 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 52/159 (32.70%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  177 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKALNG 647
            HR+L  L+ +YG ++LL  G   ++VVSS D AK+VL T    F SR R+ +FD     G+D+    YGE+WR+M+ +  +  F+NK+V+  R   ++E + ++E ++       N   L   L  +  N + R+   R++  + D   L  RL  L G
Sbjct:   54 HRSLCSLSHRYGPLMLLHFGSVPVLVVSSADAAKDVLKTHDRVFASRPRSKIFDKIFYNGRDVALAPYGEYWRQMKSVCVLHLFSNKMVRSFRDVRQEEISLMIEKIRISSSLRIN---LSEILVNLTNNVICRVALGRKYGGKTDFKDLMKRLTRLLG 209          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: C71A3_SOLME (Cytochrome P450 71A3 (Fragment) OS=Solanum melongena GN=CYP71A3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 41/146 (28.08%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  177 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 614
            HR+L  L+KKYG V+LL +G + ++V SS +  ++++ T  + + +R ++ + D      +D+ F+ +GE+WR++R I  +   +NK VQ  R   E+E + ++E +K+   ++++   LR     + YN + R+   +++  + D
Sbjct:   46 HRSLHKLSKKYGPVMLLHLGSKPVIVASSVEAVRDIMKTNDLVWSNRPKSKMADRLIYGSKDVSFSPHGEYWRQIRSITVLHLLSNKRVQSYRAAREEETSNMIEKLKQMSNSSSSATDLRDLFCWLAYNIINRVALGKKYNDEID 191          
BLAST of CN181929 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 3
Query:  177 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP-EAATNGIVLRRRLQLMMYNNMYRIMFDRRF 599
            H++L  ++++YG V+LL  G   +++VSS + A+EVL T  +E  SR + V   +FT   +D+ F  YGE+WR+MR+I     F+ K ++  R+  EDE+  +V  V K   E  T+ + LR+ +     + + R+ F + F
Sbjct:   49 HKSLHKISQEYGPVMLLHFGVVPVIIVSSKEGAEEVLKTHDLETCSRPKTVGSGLFTYNFKDIGFAPYGENWREMRKIAVSELFSQKKLKSFRYIREDESQLLVRKVSKSALETPTSSVNLRKVIFTFAASIICRLSFGQNF 190          
The following BLAST results are available for this feature:
BLAST of CN181929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
TCMO_ARATH3.538e-8280.42Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
TCMO_PEA2.294e-8177.49Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_MEDSA6.246e-7975.39Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_CICAR8.158e-7978.01Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
C75A1_PINTA6.149e-1831.72Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]
C71DB_LOTJA6.798e-1732.19Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C98A3_ARATH8.879e-1736.50Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C71AO_ARATH1.514e-1632.70Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=C... [more]
C71A3_SOLME2.583e-1628.08Cytochrome P450 71A3 (Fragment) OS=Solanum melonge... [more]
C71B5_ARATH4.406e-1633.80Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001L01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181929 ID=CN181929; Name=CN181929; organism=Citrus sinensis; type=EST; length=648bp
GGTTAATCGTAAAGATGGATCTCCTCTTGCTGGAAAAGACGCTTTTAGCC
CTCTTCGCCGCCGTTGTTGTCGCCATTACCGTCTCTAAACTCCGCGGAAA
GCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGTCCCCGTATTCGGCAACT
GGCTCCAGGTCGGCGATGACTTGAACCATCGGAACCTCTCCGACTTAGCC
AAGAAATATGGAGATGTCCTCCTCCTCCGCATGGGCCAGCGCAACCTCGT
CGTCGTCTCGTCGCCGGACCACGCCAAGGAGGTTCTGCACACGCAGGGAG
TGGAGTTCGGATCACGAACGAGGAACGTCGTGTTCGATATCTTCACTGGG
AAGGGCCAGGACATGGTGTTCACAGTGTACGGCGAGCACTGGCGGAAGAT
GCGGAGGATCATGACCGTCCCTTTCTTCACGAACAAAGTGGTTCAGCAGC
AGCGGTTTAATTGGGAAGACGAGGCCGCTAGAGTCGTTGAGGATGTTAAG
AAGGACCCCGAGGCGGCGACCAATGGGATCGTCTTGAGGAGGCGGCTGCA
GCTTATGATGTACAACAACATGTACAGGATTATGTTTGATAGAAGATTCG
AGAGTCAGGATGATCCTTTGTTTAACAGATTAAAGGCTTTGAATGGTG
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