CN181926

Overview
NameCN181926
Unique NameCN181926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 89/159 (55.97%), Postives = 108/159 (67.92%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.704e-40
Identity = 89/163 (54.60%), Postives = 110/163 (67.48%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRA----TSGVDDDLK----AWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXXNQWAFE 489
            +I L SSDGE+F+V+E VA + Q +KH++EDDC  N IPL NVT  ILS V+EYCKKHV+    DD +        DD+ K    AWD +F+K +D  T+F LILAANYLN++ LL LTCQTVAD IK KTPEE+R+ FNI+NDFT           N WAFE
Sbjct:    5 KIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
The following BLAST results are available for this feature:
BLAST of CN181926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_XENLA5.447e-4155.97S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT5.447e-4155.97S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB5.447e-4155.97S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE5.447e-4155.97S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA5.447e-4155.97S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN5.447e-4155.97S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK5.447e-4155.97S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO5.447e-4155.97S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN5.447e-4155.97S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK15_ARATH2.704e-4054.60SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181926 ID=CN181926; Name=CN181926; organism=Citrus sinensis; type=EST; length=667bp
TGGACGATCGATCAGAATGTCAACGAGTAAGAAATCACGCTGAAGAGCTC
GGATGGAGAGGCGTTCGAGGTCGATGAAGCAGTGGCGTTGGAATCGCAGA
CGATCAAGCATATGATTGAGGACGATTGCGCCGACAACGGAATCCCTTTG
CCTAACGTTACCAGTAAGATCCTCTCTAAGGTCATCGAGTACTGCAAGAA
GCACGTCGAGGCATCTAAGTCCGACGATCGGGCCACTAGCGGCGTCGATG
ATGATCTCAAGGCTTGGGATACCGATTTCGTCAAAGTCGATCAGGCCACT
CTCTTTGATCTTATTCTTGCGGCAAACTACCTGAACATCAAGAGCTTGCT
GGACTTAACTTGCCAGACTGTTGCAGACATGATTAAGGGAAAGACTCCAG
AGGAGATCCGCAAGACATTCAATATCAAGAACGACTTTACCCCAGAAGAG
GAGGAAGAGGTTCGTCGGGAGAATCAGTGGGCTTTTGAGTGAAAGGATCT
CAAATGACCAATTTGTAATTGTGTCTTTTCTTTTTTGTTTTGCCTTCTTT
TTGTTGTTGCTGCTGACTCAAATGTCTTTAGCTGGTAAAAGCATCAAACC
ATTATTGTTTTAATGTCATATCATCCCAACCTTCTCTGTATCATTAATTG
TGAAGTCCTTTTGGATC
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