CN181926

Overview
NameCN181926
Unique NameCN181926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.531e-40
Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 480
            + L+SSD + FE+++ +A  S TIK+MIED   +D+ IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.023e-40
Identity = 86/159 (54.09%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQAT-LFDLILAANYLNIKSLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I LKSSDG++FE+DE VA +S  I HM+ED CA + IPL NVTSKIL  VI+YC+KHV++ +         ++DLK WD DF+K  + T LFD+++AANYLNI+SLLDLTC+TV     AD++ GKTP+EIR  FNI+ND T          NQWAF+
Sbjct:    4 KIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKSKE---------EEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.866e-40
Identity = 85/152 (55.92%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 480
            + L+SSD + FE+++ +A  S TIK+MIED   +D  IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 90/168 (53.57%), Postives = 112/168 (66.67%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV--EASKSDD--RATS-----GVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE*KDLK 504
            +I L SSD E+FEV+EAVA + + I HMI+DDCAD  IPL NVT  IL+ VIEYCKKHV  +   SDD   ATS        ++L+ WD +F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND+TP         N WAFE  DLK
Sbjct:    5 KIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE--DLK 170          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.362e-38
Identity = 88/186 (47.31%), Postives = 110/186 (59.14%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE----------------------ASKSDD----RATSGVD------DDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I L SSDGE+F+V+E VA + Q + H+IEDDCA N IP+PNVT +IL+KVIEYCKKHVE                        K DD     +T G D      + L  WD  F+K  D  T+FD+ILAANYLN++ L DL  +T+AD IK  TPEE+R+ FNI+NDFTP         N W FE
Sbjct:    5 KIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.813e-36
Identity = 80/153 (52.29%), Postives = 98/153 (64.05%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 486
            +I L SSDGE+FE+DEAVA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV     +D        +L +WD  F+ K+D  T+F +ILAANYLN + LL    QTVAD IK KTPEE+R+ FNI+NDFTP         N W F
Sbjct:    5 KILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDEDEEA-KKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.368e-36
Identity = 79/153 (51.63%), Postives = 103/153 (67.32%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 489
            +I LKSS+G+ FE++E  A + QTI HMIE +C DN I +  +TS+IL  VIEYC KH       D A    DDDL+ WD +F++ D++T+F L  AAN+LN KSLL L  QTVADMIKG TP+++R+ FNI+ND TP         N+WAFE
Sbjct:    5 KIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-----HVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.451e-33
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADN-GIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGV----DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 483
            +I L SSD E F VD+ +A  S  IK+M+ED    N  IPLPNV+S +L KV+E+C+ H     S     S +      D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP         N+WA
Sbjct:    3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 486
            +I L SSD E FE+DEAVA + Q + HMI+DDCAD  I L NVT KIL+ +IEYCKKHV+  ++         ++   WD +FVK +D  TLF L+ AA+YL +  L +L  Q +AD    KT  EIR+ FNI+ND+TP         N+WAF
Sbjct:    5 KIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVDDVEA--------KNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 72/186 (38.71%), Postives = 102/186 (54.84%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTIKHMI---------------------------------EDDCADNGI--PLPNVTSKILSKVIEYCKKHVEASKSD-DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 483
            + L S +GE F VD+ +A  S  +K+ +                                 +DD  D+ I  P+PNV S +L KVIE+ + H +++  D D   S     + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct:    6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
The following BLAST results are available for this feature:
BLAST of CN181926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1A_DICDI3.531e-4055.92SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK5_ARATH6.023e-4054.09SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1B_DICDI7.866e-4055.92SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK16_ARATH2.289e-3953.57SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
ASK19_ARATH7.362e-3847.31SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH1.813e-3652.29SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH2.368e-3651.63SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1_SCHPO2.451e-3348.72Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK17_ARATH3.539e-3247.71SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_YEAST2.010e-2738.71Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181926 ID=CN181926; Name=CN181926; organism=Citrus sinensis; type=EST; length=667bp
TGGACGATCGATCAGAATGTCAACGAGTAAGAAATCACGCTGAAGAGCTC
GGATGGAGAGGCGTTCGAGGTCGATGAAGCAGTGGCGTTGGAATCGCAGA
CGATCAAGCATATGATTGAGGACGATTGCGCCGACAACGGAATCCCTTTG
CCTAACGTTACCAGTAAGATCCTCTCTAAGGTCATCGAGTACTGCAAGAA
GCACGTCGAGGCATCTAAGTCCGACGATCGGGCCACTAGCGGCGTCGATG
ATGATCTCAAGGCTTGGGATACCGATTTCGTCAAAGTCGATCAGGCCACT
CTCTTTGATCTTATTCTTGCGGCAAACTACCTGAACATCAAGAGCTTGCT
GGACTTAACTTGCCAGACTGTTGCAGACATGATTAAGGGAAAGACTCCAG
AGGAGATCCGCAAGACATTCAATATCAAGAACGACTTTACCCCAGAAGAG
GAGGAAGAGGTTCGTCGGGAGAATCAGTGGGCTTTTGAGTGAAAGGATCT
CAAATGACCAATTTGTAATTGTGTCTTTTCTTTTTTGTTTTGCCTTCTTT
TTGTTGTTGCTGCTGACTCAAATGTCTTTAGCTGGTAAAAGCATCAAACC
ATTATTGTTTTAATGTCATATCATCCCAACCTTCTCTGTATCATTAATTG
TGAAGTCCTTTTGGATC
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