CN181926

Overview
NameCN181926
Unique NameCN181926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   31 EITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 384
            +I LKSSDG+ FE++E  A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC KH       D A    D+DLK WD +F++ DQ T+F L+ AA  L+IKSLL L  QTVADM+
Sbjct:    5 KIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  103 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLT 360
            IK M EDDCADNGIPLPNVTSKIL  VIEYCKKHV  SK         ++DLK WD +F+ K++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVVESK---------EEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADN---GIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 441
            I L+++DG   +V++ VA+    I + +I+     +    I LP  V   +LS + +YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D T
Sbjct:   18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNK--------ERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150          
BLAST of CN181926 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 44/141 (31.21%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   34 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCA---DNGIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 441
            I L+++DG   +V++ VA+    I + +I+       ++ I LP  V   + S +++YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D T
Sbjct:   18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNK--------ERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLT 150          
The following BLAST results are available for this feature:
BLAST of CN181926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK7_ARATH5.847e-2755.08SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH1.032e-2365.52SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH4.068e-1232.62SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH3.444e-1131.21SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181926 ID=CN181926; Name=CN181926; organism=Citrus sinensis; type=EST; length=667bp
TGGACGATCGATCAGAATGTCAACGAGTAAGAAATCACGCTGAAGAGCTC
GGATGGAGAGGCGTTCGAGGTCGATGAAGCAGTGGCGTTGGAATCGCAGA
CGATCAAGCATATGATTGAGGACGATTGCGCCGACAACGGAATCCCTTTG
CCTAACGTTACCAGTAAGATCCTCTCTAAGGTCATCGAGTACTGCAAGAA
GCACGTCGAGGCATCTAAGTCCGACGATCGGGCCACTAGCGGCGTCGATG
ATGATCTCAAGGCTTGGGATACCGATTTCGTCAAAGTCGATCAGGCCACT
CTCTTTGATCTTATTCTTGCGGCAAACTACCTGAACATCAAGAGCTTGCT
GGACTTAACTTGCCAGACTGTTGCAGACATGATTAAGGGAAAGACTCCAG
AGGAGATCCGCAAGACATTCAATATCAAGAACGACTTTACCCCAGAAGAG
GAGGAAGAGGTTCGTCGGGAGAATCAGTGGGCTTTTGAGTGAAAGGATCT
CAAATGACCAATTTGTAATTGTGTCTTTTCTTTTTTGTTTTGCCTTCTTT
TTGTTGTTGCTGCTGACTCAAATGTCTTTAGCTGGTAAAAGCATCAAACC
ATTATTGTTTTAATGTCATATCATCCCAACCTTCTCTGTATCATTAATTG
TGAAGTCCTTTTGGATC
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