CN181924

Overview
NameCN181924
Unique NameCN181924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7556 contig Csv1_Contig7556:86..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  407 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D+    A KYG+ G PTL  F  G     + G
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  407 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D+    A KYG+ G PTL  F  G     + G
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  407 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D+    A KYG+ G PTL  F  G     + G
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  404 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++V +T  +F++ VL     VLV+++A WCG CK +AP  ++VA  +  +  + V  L+ D+ +D   KYGV G PTL  F  GN +  + G
Sbjct:    4 HIVNVTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDY--QGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  407 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D+    A KYG+ G PTL  F  G     + G
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  407 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D+    A KYG+ G PTL  F  G     + G
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  407 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 679
            ++ LT D+FD  VL     +LV+F+A WCG CK +AP  +++A  +  +  + VA L+ D+    A KYG+ G PTL  F  G     + G
Sbjct:    5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 93          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  392 AVPSNVVVLTA-------DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 661
            A P   VV+ A       D F  +VL+ S  VLV+F+APWCG C+ +AP  +++A  +  +D +    L+ D+  ++A +YG+   PT+  F  G K
Sbjct:   24 AAPRRSVVVRAEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKK 118          
BLAST of CN181924 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  416 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 655
            +T D+F++ VL   K VLV+F+A WCG C+ +AP+ E +AA +   D + +  L+ D+    A KYGV   PTL  +  G
Sbjct:    8 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGG 85          
The following BLAST results are available for this feature:
BLAST of CN181924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
THIO_SHIFL4.704e-1137.36Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY4.704e-1137.36Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI4.704e-1137.36Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_PSEAE4.704e-1136.96Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO_ECOLI4.704e-1137.36Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL64.704e-1137.36Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO574.704e-1137.36Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
TRXM_CHLRE6.144e-1135.05Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIO_STRCO6.144e-1140.00Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181924 ID=CN181924; Name=CN181924; organism=Citrus sinensis; type=EST; length=684bp
GCTAGCTCTAGGCACTTTAACCTTGTTCTTCGTATCAGCTCTAGCGGACG
ATGTCGTTGTGCTAACAGAAGACAACTTCGAGAAGGAGGTTGGTCAGGAC
AGGGGAGCTCTTGTTGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAAAA
GCTTGCTCCAGAGTATGAGAAACTTGGTGCAAGCTTTAAGAAAGCAAAGT
CTGTCTTGATTGGAAAGGTGGACTGTGACGAGCATAAGAGCTTATGCAGC
AAATATGGTGTTCAAGGATACCCAACAATTCAATGGTTTCCTAAAGGTTC
TTTGGAACCCAAAAAGTATGAAGGGCCACGATCTGCTGAAGCCCTTGCTG
AGTATGTGAATAATGAAGGAGGAACCAATGTGAAGATAGCTGCAGTCCCA
TCCAATGTGGTGGTACTAACAGCTGATAATTTTGATGAGATAGTTTTGGA
CAAAAGCAAAGATGTTTTGGTTGAATTTTATGCACCATGGTGTGGCCATT
GCAAAAACCTTGCGCCTACATATGAAAAGGTGGCAGCCGCATTTACATTG
GAAGATGATGTAGTTGTTGCTAATTTGGATGCTGACAAATACAAGGATCT
GGCTGAGAAGTATGGAGTTAGTGGATTTCCTACATTGAAGTTCTTTCCAA
AAGGCAACAAAGATGGTGAGGAATATGGGGGTGG
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