CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEPC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PG S  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDYTPGESLHAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSNDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROM0 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9301) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  434 IRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            I  +LPHR+PF LVD+VIE  PG  AVA+KNVT+N+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI
Sbjct:   17 ILGLLPHRYPFALVDKVIENIPGERAVAVKNVTLNEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_OCEIH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Oceanobacillus iheyensis GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +MD+ Q+++I+PHR+PFLLVD+V+E   G    A+KNV++N+ FF GHFPE P+MPGVL++EA+AQ G + +L  E    +   F AG+
Sbjct:    1 MMDVEQVKEIIPHRYPFLLVDKVVEIQEGEKVTALKNVSVNEPFFQGHFPEYPVMPGVLILEALAQTGAIAVLNIEENKGKIG-FLAGV 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_NITMU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            MDI++I   LPHR+P LLVDRV+ + PG S  A+KNVTIN+ FF GHFP  P+MPGVL++EA+AQ   L+ L+     + EN  ++F GI
Sbjct:    1 MDIHEILKYLPHRYPLLLVDRVLAFEPGKSLTALKNVTINEPFFTGHFPHHPVMPGVLVIEALAQAAALLTLKTSNVEADENSIYYFVGI 90          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_COXBR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 47/92 (51.09%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ----PEVGGSRENFFFAGI 682
            M+I  I+  +PHR+PFLL+DRVI+     S VAIKNVT+N+ FF GHFP RP+MPGVL++E++AQ  G+++++    PE  G ++ +FFAG+
Sbjct:    1 MNITDIKKYIPHRYPFLLIDRVIKIEKDKSLVAIKNVTVNEPFFTGHFPVRPVMPGVLIIESLAQAAGILIVKSLNLPE--GHKDIYFFAGV 90          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_COXBN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 47/92 (51.09%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ----PEVGGSRENFFFAGI 682
            M+I  I+  +PHR+PFLL+DRVI+     S VAIKNVT+N+ FF GHFP RP+MPGVL++E++AQ  G+++++    PE  G ++ +FFAG+
Sbjct:    1 MNITDIKKYIPHRYPFLLIDRVIKIEKDKSLVAIKNVTVNEPFFTGHFPVRPVMPGVLIIESLAQAAGILIVKSLNLPE--GHKDIYFFAGV 90          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_THEP3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            M+   IR ILPHR+PFLLVDR+IE   G  AV IKNVT N+ FF GHFP+ PIMPGVL+VEA+AQV G+ ++  E
Sbjct:    1 MENKDIRKILPHRYPFLLVDRIIEIEEGKKAVGIKNVTANEPFFQGHFPDNPIMPGVLIVEALAQVAGIAVMNIE 75          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STAS1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            T+ D NQI++I+PHR PFLL+DRV+EY  G   VAIK V+ N+ FF GHFPE  +MPGVL+ EA+AQ G + +L  E    +   FFAGI
Sbjct:    3 TIFDYNQIKEIIPHRQPFLLIDRVVEYEVGTRCVAIKQVSGNEPFFQGHFPEYAVMPGVLITEALAQTGAVAILNSEENKGK-LAFFAGI 91          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila (strain Corby) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFFFAGI 682
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+EA+AQ  G+   +  QP+ G    + +FAGI
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLEALAQACGILANLSRQPKEGYEFLH-YFAGI 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila (strain Paris) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFFFAGI 682
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+EA+AQ  G+   +  QP+ G    + +FAGI
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLEALAQACGILANLSRQPKEGYEFLH-YFAGI 94          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SHEPC6.549e-2154.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROM06.549e-2160.71(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_OCEIH6.549e-2149.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_NITMU6.549e-2153.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_COXBR6.549e-2151.09(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_COXBN6.549e-2151.09(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEP38.553e-2162.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STAS18.553e-2154.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPC8.553e-2158.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPA8.553e-2158.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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