CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_EXIS2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=fabZ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 2
Query:  425 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            I QI++++PHR+PFLLVDR++E   G  AV IKNVT N+ FF GHFP+  +MPGVL+VEA+AQVG   +L+ E    +   FFAGI
Sbjct:    4 IEQIKEVIPHRYPFLLVDRILEVEEGKRAVGIKNVTANEEFFNGHFPDYNVMPGVLIVEALAQVGAFAVLKMEQNQGK-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CAMHC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            ++DIN+I +ILPHRFPFLL+DRVI+  PG+S  A KNVT N+  F GHFP  PI PGV+++E MAQ GG++
Sbjct:    1 MIDINEILEILPHRFPFLLIDRVIDLQPGISIKAYKNVTFNEQIFQGHFPGHPIYPGVMIIEGMAQAGGVL 71          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_THERP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  431 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML-QPEVGGSRENFFFAGI 682
            QI++I+PHR+PFLLVDR+IE   G  AV IKNVT+N+ FF GHFP  P+MPGVL++EA+AQVG + +L  P+     +  FFAGI
Sbjct:    6 QIQEIIPHRYPFLLVDRIIEIEWGQRAVGIKNVTVNEPFFVGHFPGNPVMPGVLIIEALAQVGAVALLGHPQY--RDKTAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SINMW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Sinorhizobium medicae (strain WSM419) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF 670
            DI +I  +LPHR+PFLLVDR+IE +   SA+ IKNVT N+  F GHFPE+PIMPGVL++E MAQ  G +  +   GGS   +F
Sbjct:   12 DIQEILKLLPHRYPFLLVDRIIEIDSDNSAIGIKNVTANEPHFTGHFPEKPIMPGVLLIEGMAQTAGAICARKTGGGSNLVYF 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_POLNS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Polynucleobacter necessarius (strain STIR1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  410 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            P  +DIN+I  +LPHR+PFLLVDRV+E +P  S  A+KNVT+N+ FF GHFP  P+MPGVL++EA+AQ   L+    E       ++FAGI
Sbjct:    4 PIAIDINKILKLLPHRYPFLLVDRVLEISPRESITALKNVTMNEPFFQGHFPGFPMMPGVLIIEALAQTAALLTFSDE-RAEDAIYYFAGI 93          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_DECAR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Dechloromonas aromatica (strain RCB) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ--PEVGGSRENFFFAGI 682
            MDI +I + LPHR+PFLLVDRV+E  PG S  A KNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++  +   E       F+FAGI
Sbjct:    1 MDIIEILEHLPHRYPFLLVDRVLEIEPGKSIHAYKNVTINEPFFVGHFPHHPVMPGVLIMEALAQAAGILSFKSMDEKPSPDTVFYFAGI 90          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CLOD6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium difficile (strain 630) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I++I+ ++PHR+PFLLVD++ E   G  AV IKNVT+N+ FF GHFPE P+MPGVL+VEA+AQV G+ M+  E    +    FAGI
Sbjct:    1 MLNIDEIKKLIPHRYPFLLVDKITELEVGKRAVGIKNVTVNEPFFQGHFPEYPLMPGVLIVEALAQVCGVAMMSVEENKGKLG-VFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACHD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus halodurans GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++ I  I+ I+PHR+PFLL+DR+ E   G  AV IKNVT+N++FF GHFP+ P+MPGVL+VEA+AQVG   +L  E    +   FFAGI
Sbjct:    1 MLTIEDIKKIIPHRYPFLLIDRLEELEDGKRAVGIKNVTVNEDFFNGHFPDYPVMPGVLIVEALAQVGACAILNVEENKGK-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEDO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ--PEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV+++  G S  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+  +   E       ++FAGI
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDFTRGESLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSEEPSPNVLYYFAGI 97          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFFFAGI 682
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+EA+AQ   +   +  QP+ G    + +FAGI
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLEALAQACAILASLSRQPKEGHEFLH-YFAGI 94          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_EXIS21.905e-2055.81(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CAMHC1.905e-2060.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THERP2.489e-2057.65(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SINMW2.489e-2055.42(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_POLNS2.489e-2052.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DECAR2.489e-2055.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOD62.489e-2052.81(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACHD2.489e-2053.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEDO3.250e-2054.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPH3.250e-2057.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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