CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CHRSD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fabZ PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            MDIN+IR+ LPHR+PFLLVDRV E   G + VA KNV+IN+ FF GHFP  PIMPGVL++EAMAQ  G++
Sbjct:    1 MDINEIREYLPHRYPFLLVDRVTEITLGETIVAYKNVSINEPFFNGHFPHHPIMPGVLIIEAMAQACGIL 70          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CELJU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Cellvibrio japonicus (strain Ueda107) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML-----QPEVGGSRENFFFAGI 682
            +MD+N+IR+ LPHR+PFLLVDRV+E   G S +A KN+T+N+  F GHFP+ P+ PGV+++EAMAQ  G++       +PE G     + FAG+
Sbjct:    1 MMDVNEIREYLPHRYPFLLVDRVVELVEGESIIAYKNITVNEEVFNGHFPQNPVFPGVMILEAMAQASGILGFKTMGKKPEDGSI---YLFAGV 91          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_POLSQ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  410 PTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            P  +DI++I  +LPHR+PFLLVDRV+E  P  +  A+KNVT+N+ FF GHFP+ P+MPGVL++EA+AQ   L+    E       ++FAGI
Sbjct:    4 PIAIDIHKILQLLPHRYPFLLVDRVLEITPRETITALKNVTMNEPFFQGHFPDFPVMPGVLIIEALAQTAALLTFSEE-RAEDAIYYFAGI 93          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CLOPS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens (strain SM101 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +M+IN+I++ILPHR+PFLLVD+V E       VA KNVTIN+ FF GHFP+ P+MPGVL+VEA+AQ G + +L  E    +   FFAGI
Sbjct:    1 MMNINEIKEILPHRYPFLLVDKVEEITES-KVVAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTP-FFAGI 87          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CLOP1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +M+IN+I++ILPHR+PFLLVD+V E       VA KNVTIN+ FF GHFP+ P+MPGVL+VEA+AQ G + +L  E    +   FFAGI
Sbjct:    1 MMNINEIKEILPHRYPFLLVDKVEEITES-KVVAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTP-FFAGI 87          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VARPS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Variovorax paradoxus (strain S110) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            T +DI+QI  +LPHR+PFLLVDRV++   G    A+KNVT+N+ FF GHFP RP+MPGVLM+EAMAQ   L+
Sbjct:    4 TTLDIHQILKLLPHRYPFLLVDRVLDMEKGKRITALKNVTMNEPFFNGHFPHRPVMPGVLMLEAMAQAAALL 75          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RHORT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=fabZ PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 43/75 (57.33%), Postives = 61/75 (81.33%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 637
            T +DI +I D++PHR+PFL+VD++I+   G SA+ IKNVTIN+ FF GHFP RP+MPGVL+VEAMAQ   +++++
Sbjct:   12 TTVDIARIIDMIPHRYPFLMVDKLIDMVRGESAIGIKNVTINEPFFQGHFPNRPVMPGVLIVEAMAQTAAVLVVE 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_HAHCH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Hahella chejuensis (strain KCTC 2396) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            M+IN+I++ LPHR+PFLLVDRV+E  PG     +KN+T N+  F GHFP+ PIMPGVL++EAMAQV G++
Sbjct:    1 MEINEIKEYLPHRYPFLLVDRVLEIKPGEFIAGVKNITYNEPQFTGHFPDHPIMPGVLIIEAMAQVAGIL 70          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_EXISA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2
Query:  425 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            I QI++++PHR+PFLL+DR+IE      AV +KNVT N+ FF GHFP+  +MPGVL+VEA+AQVG   ML+ E     +  FFAGI
Sbjct:    4 IEQIKEVIPHRYPFLLIDRIIEVEEKKRAVGLKNVTANEEFFNGHFPDYNVMPGVLIVEALAQVGAFAMLKDE-SNRGKLAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_DESVM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=fabZ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 49/90 (54.44%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGI 682
            ++DI QI  +LPHR+PFLLVDRV EY PG      KNVT+N+ FF GHFP  P+MPGVL++EA+AQ GG LV+   +     + F F GI
Sbjct:    8 ILDIRQILGLLPHRYPFLLVDRVTEYVPGEYIKGYKNVTMNEPFFEGHFPGVPVMPGVLIMEALAQAGGILVVKSTDTPVEDKLFLFTGI 97          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_CHRSD3.250e-2065.71(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CELJU3.250e-2048.94(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_POLSQ4.245e-2050.55(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOPS4.245e-2056.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOP14.245e-2056.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VARPS5.544e-2061.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RHORT5.544e-2057.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HAHCH5.544e-2060.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_EXISA5.544e-2054.65(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESVM5.544e-2054.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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