CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNR3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain RCC307) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  404 AFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            A   +M   QI ++LPHR+PF LVDRV+E+ PG  AVAIKN+T+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGI
Sbjct:    7 AHSPLMSSEQIMNLLPHRYPFALVDRVLEHEPGKRAVAIKNITLNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ANOFW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF 670
            ++DI QI+ I+PHR+PFLLVDR++E   G  AV IKNV+ N+ FF GHFPE P+MPGVL+VEA+AQVG + ML  E    R  FF
Sbjct:    1 MLDIQQIQQIIPHRYPFLLVDRIVEVEEGKRAVGIKNVSANEQFFVGHFPEYPVMPGVLIVEALAQVGAVAMLMKEENRGRLAFF 85          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_GEOSW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacillus sp. (strain WCH70) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF 670
            ++DI QI+ I+PHR+PFLLVDR++E   G  AV IKNV+ N++FF GHFPE P+MPGVL+VEA+AQVG + ML+ E    R  FF
Sbjct:    1 MLDIQQIQAIIPHRYPFLLVDRILEIEEGKRAVGIKNVSANESFFVGHFPEYPVMPGVLIVEALAQVGAVAMLKKEENRGRLAFF 85          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ACIAC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM--LQPEVGGSRENFFFAGI 682
            +MDI+QI  +LPHR+PFLLVDRV+E   G    AIKNVTIN+ FF GHFP RP+MPGVLM+EA+AQ  GL+   +  E  G  + F+F GI
Sbjct:    1 MMDIHQILKLLPHRYPFLLVDRVVELERGERIQAIKNVTINEPFFTGHFPNRPVMPGVLMLEALAQAAGLLSFDMMGEAPGDDKVFYFVGI 91          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH8102) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            V+   QI  +LPHR+PF LVDRVI + PGVSA  IKNVT+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGI
Sbjct:   15 VLTSEQIAGLLPHRYPFALVDRVIAHEPGVSATGIKNVTVNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGI 102          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROMP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  431 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            +I  +LPHRFPF L+DRVIE+ PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VEAMAQVGG+++ Q P++   +  F FAGI
Sbjct:   16 EILGLLPHRFPFALIDRVIEHVPGKKAVALKNVTINEPQFQGHFPERPLMPGVLIVEAMAQVGGIIVTQMPDL--PKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: LPXZ_CHLTE (Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidum GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            + DIN I++ILPHR+PFLL+D+++E+      V+IKNVT+N+ FF GHFP  PIMPGVL++EAMAQ GG++ML  +        FF GI
Sbjct:  323 IFDINAIQNILPHRYPFLLIDKIVEFKLDEKIVSIKNVTMNEPFFQGHFPGNPIMPGVLIIEAMAQTGGIMMLNGKENIKESVVFFMGI 411          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LISW6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGI
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIG-LFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LISMO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria monocytogenes GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGI
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIG-LFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LISMF ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGI
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIG-LFAGI 88          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNR34.102e-2358.51(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANOFW5.357e-2358.82(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOSW6.997e-2358.82(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACIAC6.997e-2358.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPX9.138e-2361.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMP9.138e-2363.53(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_CHLTE1.559e-2253.93Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidu... [more]
FABZ_LISW61.559e-2257.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LISMO1.559e-2257.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LISMF1.559e-2257.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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