CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:51..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LISMC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGI
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIG-LFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LISIN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria innocua GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGI
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIG-LFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_GEOSL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter sulfurreducens GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL 625
            TV DIN+I  ILPHR+PFLLVDR++EY  G   V IKNV+IN+ FF GHFP  P+MPGVL+VEAMAQVGG+
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEYVAGERIVGIKNVSINEPFFQGHFPGHPVMPGVLIVEAMAQVGGI 73          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CARHZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fabZ PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            + DI +I +ILPHR+PFLLVD+++E  PG  AV IKNVTIN+ FF GHFP RPIMPGVL++EAMAQVG + +L  E
Sbjct:    5 IKDITEIMNILPHRYPFLLVDKILEVVPGEKAVGIKNVTINEPFFQGHFPGRPIMPGVLLLEAMAQVGAVAILTDE 80          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEWM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN-FFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PG +  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+  +     S ++ ++FAGI
Sbjct:    8 MDIKEIMSFLPHRYPFLLIDRVLDYTPGETLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAYKTMKEASEDSLYYFAGI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROM5 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9515) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  431 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            +I  +LPHRFPF LVDRVIE+ PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI
Sbjct:   16 EILGLLPHRFPFALVDRVIEHIPGHKAVALKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LISMH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGI
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEDGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQNEANKGKIG-LFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9311) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVA+KNVT N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGI
Sbjct:   13 VLNAEQIMGLLPHRYPFALVDRVLEHVPGERAVALKNVTFNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGI 100          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROM2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9215) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 2
Query:  431 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            QI  +LPHR+PF LVD+VIE+ PG  AVAIKNVTIN+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI
Sbjct:   16 QILGLLPHRYPFALVDKVIEHIPGERAVAIKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_GEOUR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter uraniireducens (strain Rf4) GN=fabZ PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            MDIN+I  ILPHRFPFL+VDR++E  PG   V +KNVTIN+ FF GHFP  P+MPGVL+VEAMAQV G++
Sbjct:    1 MDINEIMKILPHRFPFLMVDRIVEMEPGKRCVGLKNVTINEPFFQGHFPGHPVMPGVLIVEAMAQVAGIM 70          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_LISMC1.559e-2257.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LISIN1.559e-2257.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOSL1.559e-2269.01(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CARHZ1.559e-2264.47(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEWM2.036e-2256.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROM52.036e-2263.53(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LISMH2.036e-2257.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS32.659e-2260.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROM22.659e-2263.53(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOUR2.659e-2267.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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