CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BART1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=fabZ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFF 673
            +DI ++  ILPHR+PFLL+DR++  +    A+ IKN+TIN+  F GHFP +P+MPGVL++EAMAQ  G + L   +G  R N  +
Sbjct:   13 VDIEKLLSILPHRYPFLLIDRIVNIDGEQEAIGIKNITINEPHFTGHFPTKPVMPGVLILEAMAQTAGAIALL-NLGNKRTNLVY 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BARBK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=fabZ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML 634
            +DI ++  +LPHR+PFLL+DR+IE +    A+ IKNVT+N+  F GHFPE P+MPGVL++EAMAQ  G + L
Sbjct:   13 IDIVKLLSVLPHRYPFLLIDRIIEIDGDRKAIGIKNVTVNEPHFVGHFPENPVMPGVLILEAMAQTAGAISL 84          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRP3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M3 GN=fabZ PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E   S+   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKSK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRMU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus mutans GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 46/89 (51.69%), Postives = 67/89 (75.28%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI++IR+ LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP+ P+MPGVL++EA+AQ  G++ L  +   + +  F+AG+
Sbjct:    1 MIDISKIREALPHRYPILLVDRVLEVSDD-EIVAIKNVTINEPFFNGHFPQYPVMPGVLIMEALAQTAGVLELSKK-ENTGKLVFYAGM 87          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSYA2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fabZ PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  434 IRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            ++  LPHR+PFLLVD+++   PG     IKNVTIN+ FF GHFP+ PIMPGVLMVE MAQV G++
Sbjct:    8 LKHYLPHRYPFLLVDKIVACTPGECITGIKNVTINEEFFNGHFPDEPIMPGVLMVECMAQVSGVL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSEPK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain KT2440) GN=fabZ PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAV-AIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MDIN+IR+ LPHR+PFLLVDRV + +    ++ A KNV+IN+ FF GHFP  PIMPGVL++EAMAQ  G++
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVTDLDFEAQSIRAYKNVSINEPFFNGHFPAHPIMPGVLIIEAMAQAAGIL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSEPG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain GB-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAV-AIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MDIN+IR+ LPHR+PFLLVDRV + +    ++ A KNV+IN+ FF GHFP  PIMPGVL++EAMAQ  G++
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVTDLDFEAQSIRAYKNVSINEPFFNGHFPAHPIMPGVLIIEAMAQAAGIL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSEP1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAV-AIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MDIN+IR+ LPHR+PFLLVDRV + +    ++ A KNV+IN+ FF GHFP  PIMPGVL++EAMAQ  G++
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVTDLDFEAQSIRAYKNVSINEPFFNGHFPAHPIMPGVLIIEAMAQAAGIL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ENTS8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR--ENFFFAGI 682
            + I +I ++LPHR+PFLLVDRV+++  G    A+KNV++N+ FF GHFP +PI PGVL++EAMAQ  G++  +  VG     E ++FAGI
Sbjct:    8 LHIEEILELLPHRYPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFK-SVGKLEPGELYYFAGI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ENT38 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Enterobacter sp. (strain 638) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR--ENFFFAGI 682
            + I +I ++LPHR+PFLLVDRV+++  G    A+KNV++N+ FF GHFP +PI PGVL++EAMAQ  G++  +  VG     E ++FAGI
Sbjct:    8 LHIEEILELLPHRYPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFK-SVGKLEPGELYYFAGI 96          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_BART13.042e-1848.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BARBK3.042e-1855.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRP33.973e-1854.55(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRMU3.973e-1851.69(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSYA23.973e-1861.54(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEPK3.973e-1859.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEPG3.973e-1859.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEP13.973e-1859.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ENTS83.973e-1850.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ENT383.973e-1850.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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