CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:51..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNP2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  425 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGI 682
            + +I+ +LPHR+PF LVDR++EY PG  AV +KN+T N+  F GH P  PIMPGVLMVEAMAQVGG ++ Q  + G  ++FF FAGI
Sbjct:   15 VEEIQKLLPHRYPFSLVDRILEYIPGEKAVGLKNITFNEPHFQGHIPNHPIMPGVLMVEAMAQVGGFILTQ--MPGMEDSFFAFAGI 99          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PELTS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=fabZ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            ++DINQI++I+PHR+PFLLVDR++    G  AV +KNV+ N+ +F GHFP  P+MPGVL++EAMAQVG + +L+ PE  G     FFAGI
Sbjct:    1 MLDINQIKEIIPHRYPFLLVDRILSVEDGRKAVGLKNVSANEPYFQGHFPGYPVMPGVLIIEAMAQVGAVAVLRLPEFAGKMA--FFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_DESDG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfovibrio desulfuricans (strain G20) GN=fabZ PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGI 682
            +++DI QI  +LPHR+PFLLVDRV++Y PG    A+KNVT+N+ FF GHFP+ P+MPGVL++EA+AQ GG LV+   +     + F F G+
Sbjct:    7 SILDIRQILGLLPHRYPFLLVDRVLDYTPGECITAVKNVTMNEPFFQGHFPDVPVMPGVLIMEALAQAGGILVVKSTDTSVEGKLFLFTGM 97          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS195) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSSDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS185) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSSDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB5 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSSDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS223) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSSDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACLD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++D  QI++I+PHR+PFLLVDRV E   G  A   KNVT+N+ FF GHFP+ P+MPGVL+VEA+AQVG + +L  E    R   FFAGI
Sbjct:    1 MLDAQQIKEIIPHRYPFLLVDRVTEVEEGKRAAGYKNVTVNEEFFNGHFPDYPVMPGVLIVEALAQVGAVALLMKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ACISJ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acidovorax sp. (strain JS42) GN=fabZ PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM--LQPEVGGSRENFFFAGI 682
            MDI+QI  +LPHR+PFLLVDRV E   G   +AIKNVTIN+ FF GHFP RP+MPGVL++EA+AQ  GL+   +  E  G  + F+F GI
Sbjct:    1 MDIHQILKLLPHRYPFLLVDRVNELERGKRILAIKNVTINEPFFTGHFPARPVMPGVLILEALAQAAGLLSFDMMGEAPGDDKVFYFVGI 90          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNP6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  404 AFPTV-MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGI 682
            A PT+ + +  I+ +LPHR+PF LVDR+I+Y PG  AV IKNVT N+  F GHFP RP+MPGVL+VEAMAQVGG +V L P++   +  F FAGI
Sbjct:    9 ALPTLPLAVETIQGLLPHRYPFALVDRIIDYVPGERAVGIKNVTFNEPQFQGHFPGRPLMPGVLIVEAMAQVGGVIVTLMPDM--PQGLFVFAGI 101          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNP23.473e-2257.47(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PELTS3.473e-2255.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESDG4.535e-2252.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB97.736e-2256.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB87.736e-2256.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB57.736e-2256.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB27.736e-2256.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACLD7.736e-2256.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACISJ7.736e-2257.78(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNP61.010e-2157.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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