CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSEU2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MDI +IR+ LPHR+PFLLVDRV E +    +  A KNV++N+ FF GHFPE PIMPGVL++EAMAQ  G++
Sbjct:    1 MMDIKEIREYLPHRYPFLLVDRVTELDIENKNIRAYKNVSVNEPFFNGHFPEHPIMPGVLIIEAMAQAAGIL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSE14 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MDI +IR+ LPHR+PFLLVDRV E +    +  A KNV++N+ FF GHFPE PIMPGVL++EAMAQ  G++
Sbjct:    1 MMDIKEIREYLPHRYPFLLVDRVTELDIENKNIRAYKNVSVNEPFFNGHFPEHPIMPGVLIIEAMAQAAGIL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_NITEU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Nitrosomonas europaea GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN---FFFAGI 682
            TVMDI++I   LPHR+P +LVDRV+    G    A KNV+IN+ +F GHFP  P+MPGVL++EA+AQ   L+ ++ E    ++N   ++F GI
Sbjct:    8 TVMDIHEILKYLPHRYPLILVDRVVSLESGKRIHAYKNVSINEPYFSGHFPHHPVMPGVLIIEALAQAAALLTIRSE-NMEKDNGQVYYFVGI 99          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_MARAV ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +M I++I + LPHR+PFLLVDRV E   G S    KNV+ N+ FF GHFP+ PIMPGVL++EAMAQ+ G++
Sbjct:    1 MMHIDEILEYLPHRYPFLLVDRVTEVEKGKSIKGYKNVSFNEPFFTGHFPDNPIMPGVLIIEAMAQLSGIL 71          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBPA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio parahaemolyticus GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            M+I++I+++LPHR+PFLL+DRVI++       AIKNV++N+  F GHFP+ P+ PGVL++EAMAQ  GL+  +   G   EN  ++FA +
Sbjct:    8 MNISEIQELLPHRYPFLLIDRVIDFQEAKYLHAIKNVSVNEPQFTGHFPQLPVFPGVLILEAMAQATGLLAFK-SFGAPTENELYYFASV 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYMTH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Symbiobacterium thermophilum GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  440 DILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML-QPEVGGSRENFFFAGI 682
            +I+PHR PFLL+DRV+E  PG   VA+KNV++N+  F GH+P  PI PGVL++EAMAQ G + +L QPE  G      FAGI
Sbjct:    2 EIIPHRHPFLLIDRVLELEPGRRVVAVKNVSMNEPVFQGHYPGNPIFPGVLILEAMAQAGAVAVLSQPEFAGKVP--LFAGI 81          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MMDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 87          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROMH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Proteus mirabilis (strain HI4320) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR--ENFFFAGI 682
            + I +I D+LPHR+PFLLVDRV+++  G    A+KNV+ N+ FF GHFP +PI PGVL++EAMAQ  G++  +  VG     E ++FA I
Sbjct:    7 LQIEEILDLLPHRYPFLLVDRVLDFEEGKFLRAVKNVSFNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFK-SVGKLEPGELYYFAAI 95          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PHOPR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Photobacterium profundum GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            ++I +I+ +LPHR+PFL++DRV +Y  G +  A KNV+IN+  F GHFP+ PI PGV+++EAMAQ  GL+  +   G   EN  ++FA I
Sbjct:    8 LNITEIQALLPHRYPFLMIDRVTDYEEGQTLTAYKNVSINEPLFTGHFPKMPIFPGVMILEAMAQATGLLAFK-SFGAPSENELYYFASI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_OENOB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=fabZ PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF 670
            M   +I+ +LPHR+P L+VDRV+E   G   +A KNVTIN+ FF GHFP  P+MPGVL+VEA+AQ G + +L+ +    +  +F
Sbjct:    1 MTATEIQKVLPHRYPMLMVDRVLELVSGERILAQKNVTINEEFFQGHFPGNPVMPGVLIVEALAQAGAIALLKMDRFAGKTPYF 84          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_PSEU26.777e-1859.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSE146.777e-1859.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_NITEU6.777e-1847.31(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MARAV6.777e-1857.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBPA8.851e-1847.78(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYMTH8.851e-1854.88(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRPZ8.851e-1852.81(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMH8.851e-1850.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PHOPR8.851e-1847.78(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_OENOB8.851e-1848.81(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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