CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_IDILO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Idiomarina loihiensis GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV--MLQPEVGGSRENFFFAGI 682
            DI  + D+LPHR+PFLL+DRVIE N   S  AIKNVT N+  F GHFP +PI PGVL++EA+AQ  GL+   +      + + + FAGI
Sbjct:    9 DIQGVLDLLPHRYPFLLIDRVIETNSKDSLHAIKNVTFNEPMFNGHFPAKPIFPGVLLLEAIAQACGLLGFKITESKKNANDLYLFAGI 97          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ERWT9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR--ENFFFAGI 682
            + I +I ++LPHR+PFLLVDRV+E+       A+KNV++N+ FF GHFP +PI PGVL++EAMAQ  G++  +  VG     E ++FAGI
Sbjct:    8 LKIEEIIELLPHRYPFLLVDRVLEFEESKYLRAVKNVSVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFK-SVGKLEPGELYYFAGI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CHLSY ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            ++ I +I  ++PHR+PFLLVDR++E  PGV AV  K V+ N+ +F GHFP  PIMPGVL++EA+AQ G +  L  PE  G  +   FAGI
Sbjct:    1 MLSIQEIMALIPHRYPFLLVDRIMELEPGVRAVGEKLVSANEPYFQGHFPGNPIMPGVLILEALAQTGAVAALSAPENAG--KLVLFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CHLMU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chlamydia muridarum GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGV-SAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM 631
            V+ I  I+++LPHR+PFLLVD+++ Y+    S VA KNVTIN+ FF GHFPE PIMPGVL++EA+AQ  G+++
Sbjct:    6 VLGIQDIQNLLPHRYPFLLVDKILSYDLNTRSIVAQKNVTINEPFFVGHFPEAPIMPGVLILEALAQAAGVLL 78          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CHLAA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            ++ I +I  ++PHR+PFLLVDR++E  PGV AV  K V+ N+ +F GHFP  PIMPGVL++EA+AQ G +  L  PE  G  +   FAGI
Sbjct:    1 MLSIQEIMALIPHRYPFLLVDRIMELEPGVRAVGEKLVSANEPYFQGHFPGNPIMPGVLILEALAQTGAVAALSAPENAG--KLVLFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ANAMM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anaplasma marginale (strain St. Maries) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ----PEVGGSRENFFFA 676
            +D  QI  +LPH +PFLLVDRV+E  PG S VA+KNVT N+ FF GHF + P+MPGVL++E+MAQ   L ++      E  G+R  +F +
Sbjct:    5 LDHKQIMRMLPHSYPFLLVDRVLECIPGKSIVALKNVTFNEPFFVGHFRDNPVMPGVLIIESMAQSSMLCVVSDREGDEASGNRSVYFMS 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ANAMF ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anaplasma marginale (strain Florida) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ----PEVGGSRENFFFA 676
            +D  QI  +LPH +PFLLVDRV+E  PG S VA+KNVT N+ FF GHF + P+MPGVL++E+MAQ   L ++      E  G+R  +F +
Sbjct:    5 LDHKQIMRMLPHSYPFLLVDRVLECIPGKSIVALKNVTFNEPFFVGHFRDNPVMPGVLIIESMAQSSMLCVVSDREGDEASGNRSVYFMS 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_WOLTR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN 664
            +I+ I  ILPH +PFLLVDRVIE +P  S  AIKNVT N+ FF GHFP  PIMPGVL+VE++AQ   + +L      + EN
Sbjct:    4 NISDIIKILPHSYPFLLVDRVIECDPSKSIKAIKNVTFNEPFFIGHFPNHPIMPGVLIVESLAQASAICILGKGSKSTMEN 84          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M28 GN=fabZ PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_IDILO8.851e-1851.69(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ERWT98.851e-1850.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CHLSY8.851e-1851.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CHLMU8.851e-1857.53(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CHLAA8.851e-1851.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANAMM8.851e-1850.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANAMF8.851e-1850.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_WOLTR1.156e-1755.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRPM1.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRPG1.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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