CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPF ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=fabZ PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=fabZ PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=fabZ PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRP8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M18 GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRP6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M6 GN=fabZ PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRP1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pyogenes serotype M1 GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            MDI +I+  LPHR+P LLVDRV+E +     VAIKNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MDIREIQAALPHRYPMLLVDRVLEVSDD-HIVAIKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RHOP2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rhodopseudomonas palustris (strain HaA2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVG 649
            +DIN I   LPHRFPFLL+DRV       S + +KNVT N+  F GHFPERP+ PGVLM+E MAQ  G++ +    G
Sbjct:   10 VDINTILKTLPHRFPFLLIDRVKNIREDHSGIGVKNVTFNEPAFQGHFPERPVFPGVLMIEGMAQTAGVIGIMSVTG 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RHIL3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            DI +I  +LPHR+PFL+VD++IE +   +A+ IKNVT+N+  F GHFPE PIMPGVL++E MAQ  G +
Sbjct:   13 DIIEIMKLLPHRYPFLMVDKIIEIDGDNTAIGIKNVTVNEPHFTGHFPESPIMPGVLLIEGMAQTAGAI 81          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RALEH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR-ENFFFAGI 682
            +DI +I  +LPHR+PFLLVDRV+E+        +KNVTIN+ +F GHFPE+P+MPGV+++EA+AQ  GL+    ++       ++F GI
Sbjct:    6 IDIRKILKLLPHRYPFLLVDRVLEFEAQKRIKTLKNVTINEPYFQGHFPEQPVMPGVMILEALAQSAGLLTFGADMERKEGALYYFVGI 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_MANSM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++ ++I  +LPHR+PFLLVDRV+++  G    A KN+++N+  F GHFP +PI+PGVL++EA+AQ  GL+  +       E F+FAGI
Sbjct:   10 IIEAHEIMTLLPHRYPFLLVDRVVDFEEGQWLKAYKNISVNEPCFTGHFPGQPILPGVLILEALAQSMGLLAFKTHEIKGGELFYFAGI 98          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_STRPF1.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRPC1.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRPB1.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRP81.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRP61.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRP11.156e-1753.41(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RHOP21.156e-1753.25(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RHIL31.156e-1756.52(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RALEH1.156e-1747.19(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MANSM1.156e-1746.07(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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