CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ERWCT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Erwinia carotovora subsp. atroseptica GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR--ENFFFAGI 682
            ++I +I ++LPHRFPFLLVDRV+++  G    A+KNV+ N+ FF GHFP +PI PGVL++EAMAQ  G++  +  VG     E ++FA +
Sbjct:    8 LNIEEILELLPHRFPFLLVDRVLDFEKGKFLRAVKNVSFNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFK-SVGKLEPGELYYFAAV 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CUPTR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR-ENFFFAGI 682
            +DI +I  +LPHR+PFLLVDRV+E+        +KNVTIN+ +F GHFPE+P+MPGV+++EA+AQ  GL+    ++       ++F GI
Sbjct:    6 IDIRKILKLLPHRYPFLLVDRVLEFEAQKRIKTLKNVTINEPYFQGHFPEQPVMPGVMILEALAQSAGLLTFGADMERKEGALYYFVGI 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ANASK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anaeromyxobacter sp. (strain K) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            ++D+  I+ +LPHR PFLLVDRV+E+ P    VA+K VT+N+ FF GHFP +P+MPGVL++EA+AQ   L+
Sbjct:   10 ILDVVGIQKLLPHRPPFLLVDRVVEFEPNKRVVALKGVTMNEPFFQGHFPAQPVMPGVLILEALAQAAALL 80          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ALHEH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML---QPEVGGS 655
            DIN I   LPHR+P LL+DRV+ ++     V IKNVTIN+ +F GHFP++P+MPGVL++E+MAQ  G++     Q E+GG+
Sbjct:   13 DINDIMRNLPHRYPMLLIDRVVAFSKRERLVGIKNVTINEPYFAGHFPQKPVMPGVLILESMAQACGMLAFKSEQEELGGN 93          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ2_ENTFA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase 2 OS=Enterococcus faecalis GN=fabZ2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML-QPEVGGSRENFFFAGI 682
            + I +I++ILPHR+PFLL+D V E  PG   VA KNVT+N+  F GHFP  P++PGVL++E++AQ G + +L  PE  G  +  +F G+
Sbjct:    3 LTITEIQEILPHRYPFLLLDSVEEVIPGERVVAKKNVTVNEQVFQGHFPGNPVLPGVLIIESLAQAGAVALLSMPEFKG--KTAYFGGL 89          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBHB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fabZ PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 43/90 (47.78%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            M+I++I+++LPHR+PFLL+DRVI++       AIKNV++N+  F GHFP+ P+ PGVL++EAMAQ  GL+  +   G   EN  ++FA +
Sbjct:    8 MNISEIQELLPHRYPFLLIDRVIDFQEEKYLHAIKNVSVNEPQFTGHFPQLPVFPGVLILEAMAQATGLLAFK-SFGAPTENELYYFASV 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_TERTT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-----PEVGGSRENFFFAGI 682
            ++DI +IR  LPHR+PFL++DRV+E   G S  A KNV+IN+  F GHFP  P+ PGVL++EAMAQ  G++  +     PE G     + FAGI
Sbjct:    1 MLDILEIRKYLPHRYPFLMIDRVVELIEGESITAYKNVSINEEIFQGHFPHFPVFPGVLLIEAMAQACGVLGFKTANKTPEDGSI---YLFAGI 91          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRPN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus pneumoniae GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 47/90 (52.22%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML-QPEVGGSRENFFFAGI 682
            ++DI  I++ LPHR+P LLVDRV+E +   + VAIKNVTIN+ FF GHFP+ P+MPGV+++EA+AQ  G++ L +PE  G  +  F+AG+
Sbjct:    1 MIDIQGIKEALPHRYPMLLVDRVLEVSED-TIVAIKNVTINEPFFNGHFPQYPVMPGVVIMEALAQTAGVLELSKPENKG--KLVFYAGM 87          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SILPO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Silicibacter pomeroyi GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM 631
            DI  I+ ILPHR+PFLLVD+V+E +   SAV IKNVT+N+  F GHFP  PIMPGV +VEAMAQ  G+++
Sbjct:    9 DIQLIQRILPHRYPFLLVDKVVEIDGYSSAVGIKNVTMNEPHFQGHFPGTPIMPGVTIVEAMAQTAGVML 78          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PSEA6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            + I +I ++LPHR+PFLL+DRV +Y  G S  A KN+T N+  F GHFP +PI PGVL++EA+AQ  G++  +   G S + + +AGI
Sbjct:    8 LGIEEILELLPHRYPFLLLDRVTDYTLGESITAYKNITFNEPCFTGHFPGKPIFPGVLILEALAQAAGVLGFK-TAGNSDDLYLYAGI 94          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_ERWCT1.156e-1748.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CUPTR1.156e-1747.19(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANASK1.156e-1754.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ALHEH1.156e-1751.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ2_ENTFA1.156e-1748.31(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBHB1.510e-1747.78(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_TERTT1.510e-1748.94(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRPN1.510e-1752.22(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SILPO1.510e-1761.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEA61.510e-1747.73(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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