CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_MACCJ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Macrococcus caseolyticus (strain JCSC5402) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            T++  ++I+ I+PHR+PFLL+DR+ E   G     IK V+ N+ FF GHFPE  +MPGVL+VEA+AQVG + ML+ E
Sbjct:    3 TLLSFDEIKKIIPHRYPFLLIDRITELEEGKRCTGIKQVSGNEPFFQGHFPEYAVMPGVLIVEALAQVGAVAMLKLE 79          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CAMC5 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Campylobacter curvus (strain 525.92) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            ++D+ +I+ ILPHRFPFLL+DRV E  P    VA KNVTI +  F GHFP  PI PGV++VE MAQ GG++
Sbjct:    1 MIDVVEIQKILPHRFPFLLIDRVTELEPAKHIVAYKNVTIGEPIFQGHFPGHPIYPGVMIVEGMAQAGGVL 71          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ALKMQ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Alkaliphilus metalliredigens (strain QYMF) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  419 MDIN--QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML 634
            M++N  +I+ I+PHR+PFLLVD+++E   G   V IKNVT N+ FF GHFP  PIMPGVLM EA+AQV  L+ +
Sbjct:    1 MELNNIEIQKIIPHRYPFLLVDKMVEVELGKRGVGIKNVTANEPFFQGHFPGNPIMPGVLMTEALAQVAALICM 74          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ACIBT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV--MLQPEVGGSRENFFFAG 679
            M I  IR  LPHR+PFLLVDRV E     S V  KNV+IN+ F  GHFPE PIMPGVL+VEA+AQV G++  ++  E       F FAG
Sbjct:    1 MQIQTIRQYLPHRYPFLLVDRVTEVTDN-SIVGYKNVSINEEFLQGHFPEYPIMPGVLIVEALAQVSGVLGFIMNNETPKPGSLFLFAG 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ZYMMO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Zymomonas mobilis GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 637
            +D+ ++   LPHRFP LLVDRV    PG   VAIK VTIN+ FF GHFP  PIMPGVL+VEA+AQ  G++ ++
Sbjct:   14 LDVKRVMAALPHRFPMLLVDRVETLIPGEKIVAIKAVTINEPFFTGHFPGNPIMPGVLIVEALAQAAGVLAIE 86          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_WOLPM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Wolbachia pipientis wMel GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            +I+ I   LPH +PFLLVDRVIE +PG S  AIKNVT N+ FF GHFP  PIMPGVL++E++AQ   + +L  E
Sbjct:    4 NISDIIKTLPHSYPFLLVDRVIECDPGKSIKAIKNVTFNEPFFIGHFPGHPIMPGVLIIESLAQASAICVLGKE 77          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBVY ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio vulnificus (strain YJ016) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            M+I++I+++LPHR+PFLL+DRV+++       AIKNV++N+  F GHFP+ P+ PGVL++EAMAQ  GL+  +   G   EN  ++FA +
Sbjct:    8 MNISEIQELLPHRYPFLLIDRVVDFQEEKYLHAIKNVSVNEPQFTGHFPQLPVFPGVLILEAMAQATGLLAFK-SFGAPSENELYYFASV 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBVU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio vulnificus GN=fabZ PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            M+I++I+++LPHR+PFLL+DRV+++       AIKNV++N+  F GHFP+ P+ PGVL++EAMAQ  GL+  +   G   EN  ++FA +
Sbjct:    8 MNISEIQELLPHRYPFLLIDRVVDFQEEKYLHAIKNVSVNEPQFTGHFPQLPVFPGVLILEAMAQATGLLAFK-SFGAPSENELYYFASV 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RHOPB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rhodopseudomonas palustris (strain BisB18) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +DIN I   LPHR+PFLL+DRV+      S + IKNV+ N+  F GHFPERP+ PGVLM+E MAQ  G++
Sbjct:   10 VDINTILKTLPHRYPFLLIDRVVNIRQDYSGIGIKNVSFNEPAFLGHFPERPVFPGVLMIEGMAQTAGVI 79          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RALME ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSR-ENFFFAGI 682
            +DI +I  +LPHR+P LLVDRV+E+ P      +KNVTIN+ +F GHFP++P+MPGV+++EA+AQ  GL+    ++       ++F GI
Sbjct:    6 IDIRKILKLLPHRYPILLVDRVLEFEPQKRIKTLKNVTINEPYFMGHFPDQPVMPGVMILEALAQSAGLLTFGADMERKEGALYYFVGI 94          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_MACCJ1.510e-1751.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CAMC51.510e-1757.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ALKMQ1.510e-1756.76(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACIBT1.510e-1755.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ZYMMO1.972e-1757.53(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_WOLPM1.972e-1758.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBVY1.972e-1746.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBVU1.972e-1746.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RHOPB1.972e-1755.71(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RALME1.972e-1746.07(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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