CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PETMO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 637
            M+I +I  ILPHR+PFLLVD V+E N      A KNV+IN++FF GHFP  PIMPGVL+VE MAQ  GL++L+
Sbjct:    1 MNIEEIMKILPHRYPFLLVDGVLELNEE-KIKAFKNVSINESFFQGHFPNYPIMPGVLIVEGMAQTAGLLLLK 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CHLPN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chlamydia pneumoniae GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  410 PTVMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM 631
            P+V+ + ++ D+LPHR+PFLLVD+V+ Y+    S  A KNVTIN+ FF GHFP  PIMPGVL++EA+AQ  G+++
Sbjct:    4 PSVIKLRELLDLLPHRYPFLLVDKVLSYDIEARSITAQKNVTINEPFFMGHFPNAPIMPGVLILEALAQAAGVLI 78          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_AGRVS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            DI +I  +LPHR+PFLLVDR+I+ +   +A+ IKNVT N+  F GHFPE+PIMPGVL++E MAQ  G +
Sbjct:   12 DILEIMKLLPHRYPFLLVDRIIDIDGDNAAIGIKNVTANEPQFTGHFPEQPIMPGVLLIEGMAQTAGAI 80          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_AGRRK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE-VGGS 655
            DI +I  +LPHR+PFL+VDR+IE +   SA+ IKNVT N+  F GHFP  PIMPGVL++E MAQ  G +  + + +GG+
Sbjct:   13 DIIEIMKLLPHRYPFLMVDRIIEIDSDNSAIGIKNVTANEPQFTGHFPGSPIMPGVLLIEGMAQTAGAICARKDGIGGN 91          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBSL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio splendidus (strain LGP32) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQP-EVGGSRENFFFAGI 682
            T M+I +I+++LPHR+PFL+VDRV  +    +  AIKNV++N+  F GHFP+ P+ PGVL++EAMAQ  GL+  +        E ++FA +
Sbjct:    6 TTMNITEIQELLPHRYPFLMVDRVTSFEKEKTLTAIKNVSVNEPQFTGHFPQLPVFPGVLILEAMAQATGLLAFKSFGAPSGNELYYFASV 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNFM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            MDI +I   LPHR+PFLLVDR++E       V +KNVTIN+ FF GHFP  PIMPGVL++EA+AQ GG++
Sbjct:    1 MDIAKIMGYLPHRYPFLLVDRILELT-SEEIVGLKNVTINEPFFQGHFPGEPIMPGVLIIEALAQTGGVL 69          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_STRU0 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI  I++ LPHR+P LLVDRV+E +     VA+KNVTIN+ FF GHFP  P+MPGVL++EA+AQ  G++ L  E    +   F+AG+
Sbjct:    1 MIDIKDIQEALPHRYPMLLVDRVLEVSDD-HIVALKNVTINEPFFNGHFPHYPVMPGVLIMEALAQTAGVLELSKEENKGK-LVFYAGM 87          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_RHOPS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rhodopseudomonas palustris (strain BisB5) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +DIN I   LPHRFPFLL+DRV       S + +KNVT N+  F GHFP+RP+ PGVLM+E MAQ  G++
Sbjct:   10 VDINTILKTLPHRFPFLLIDRVRNIREDYSGIGVKNVTFNEPAFQGHFPDRPVFPGVLMIEGMAQTAGVI 79          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_NITHX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +DI  I   LPHR+PFLL+DRVI      S + +KNVTIN+  F GHFPERP+ PGVLM+E MAQ  G++
Sbjct:   10 VDIATILKTLPHRYPFLLIDRVINIRADHSGIGVKNVTINEPAFQGHFPERPVYPGVLMIEGMAQTAGVI 79          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_HALHL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=fabZ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            DI  I ++LPHR+P LL+DRV+++ P     +IKNVTIN+ FF GHFP++P+MPGVL++E++AQ  G++
Sbjct:   11 DIEGIMNLLPHRYPLLLIDRVLDFQPHEHLASIKNVTINEPFFVGHFPQKPVMPGVLILESLAQACGML 79          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_PETMO1.972e-1760.27(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CHLPN1.972e-1754.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_AGRVS1.972e-1757.97(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_AGRRK1.972e-1753.16(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBSL2.575e-1745.05(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNFM2.575e-1760.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRU02.575e-1750.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RHOPS2.575e-1755.71(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_NITHX2.575e-1757.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HALHL2.575e-1753.62(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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