CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SULDN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MD+ +I+ I+PHR+PFLL+DRV +     S +  KN+TI DN F GHFP  PI PGV+++E MAQ GG++
Sbjct:    2 IMDVIEIQKIIPHRYPFLLLDRVTQIKENESLIGYKNITIGDNVFQGHFPGHPIYPGVMILEGMAQAGGIL 72          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_NITSB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Nitratiruptor sp. (strain SB155-2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            ++D+ +I+ ILPHR+PFLLVDRV+E   G S  A KNV+I++  F GHFP  PI PGV+++E MAQ GG++
Sbjct:    1 MLDVVEIQKILPHRYPFLLVDRVVELEKGKSVKAYKNVSISEPVFEGHFPGHPIYPGVMIIEGMAQAGGVL 71          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_MAGSM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Magnetococcus sp. (strain MC-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            + + +I   LPHR+PFLL+DR++E   G   +AIKNV+ N+  F GHFP+ P+MPGVL++EAMAQ G L+
Sbjct:    6 ISLQEIMSFLPHRYPFLLIDRIVEVEQGKRILAIKNVSFNEPHFQGHFPDHPVMPGVLILEAMAQAGALL 75          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ERYLH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Erythrobacter litoralis (strain HTCC2594) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQP-EVGGSRENFFFAGI 682
            DI Q+   LPHR+P LLVDRV   + G    A+K VT+N+ FF GHFP  PIMPGVL VEAMAQ   ++ ++  E+ G+ +  FF GI
Sbjct:    8 DIQQVLKALPHRYPLLLVDRVKSMDLGERIHAVKGVTMNEEFFQGHFPGAPIMPGVLQVEAMAQAAAILGIETLELAGTGKLVFFMGI 95          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BAUCH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVG--GSRENFFFAGI 682
            + + +I ++LPHRFPFLLVDRVI++       AIKNV+ N+ FF GHFP +PI PGVL++EAMAQ  G++  +   G   S E ++FA I
Sbjct:    8 LHLEEILELLPHRFPFLLVDRVIDFKKWQFLYAIKNVSYNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFK-SAGKLDSSELYYFAAI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBFM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio fischeri (strain MJ11) GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            ++I +I+++LPHR+PFLLVDRV ++       AIKNV++N+  F GHFP+ PI PGVL++EAMAQ  GL+  +   G   EN  ++FA I
Sbjct:    8 LNITEIQELLPHRYPFLLVDRVTDFEEEKYLHAIKNVSVNEPQFTGHFPQMPIFPGVLILEAMAQATGLLAFK-SFGAPAENELYYFASI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_VIBF1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            ++I +I+++LPHR+PFLLVDRV ++       AIKNV++N+  F GHFP+ PI PGVL++EAMAQ  GL+  +   G   EN  ++FA I
Sbjct:    8 LNITEIQELLPHRYPFLLVDRVTDFEEEKYLHAIKNVSVNEPQFTGHFPQMPIFPGVLILEAMAQATGLLAFK-SFGAPAENELYYFASI 96          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ROSDO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM 631
            T  DI  I+ ILPHR+PFLLVD+V+E +   SA+ IKNVT+N+  F GHFP  PIMPGV +VEAMAQ   +++
Sbjct:    6 TSADIQLIQRILPHRYPFLLVDKVVEIDGTTSALGIKNVTMNEPHFQGHFPGMPIMPGVTIVEAMAQTAAVMV 78          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_HELPS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Helicobacter pylori (strain Shi470) GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  386 IELRYQAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM------LQPEVGGSRENFF 670
            +E  +Q   +   I  I  ILPHR+P LL+DRV+E       VA KN+T N++ F GHFP++PI PGVL+VE MAQ GG +         PE+  ++  +F
Sbjct:    1 MEQNHQNLQSQFFIEHILQILPHRYPMLLIDRVVELEANKKIVAYKNITFNEDVFNGHFPDKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYF 101          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_FRATW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.737e-17
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV----------MLQPEVGGSRENFFFAGI 682
            +D+  IR ILPHR+PF L+D++++++    + VA KNVTIN++FF GHFP+ P+MPGVL+VEAMAQ   ++           +  + GG R  F  AGI
Sbjct:   11 IDVMGIRKILPHRYPFALLDKIVDWSVEDRTIVAQKNVTINEDFFNGHFPDFPVMPGVLIVEAMAQATAILGELMAETLFAHVVEKAGGGRRTFMLAGI 109          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SULDN4.393e-1752.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_NITSB4.393e-1754.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MAGSM4.393e-1752.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ERYLH4.393e-1751.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BAUCH4.393e-1750.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBFM5.737e-1748.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_VIBF15.737e-1748.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ROSDO5.737e-1757.53(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HELPS5.737e-1742.57(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_FRATW5.737e-1745.45(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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