CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:51..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNE7 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus elongatus (strain PCC 7942) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  404 AFPTV-MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGI 682
            A PT+ + +  I+ +LPHR+PF LVDR+I+Y PG  AV IKNVT N+  F GHFP RP+MPGVL+VEAMAQVGG +V L P++   +  F FAGI
Sbjct:    9 ALPTLPLAVETIQGLLPHRYPFALVDRIIDYVPGERAVGIKNVTFNEPQFQGHFPGRPLMPGVLIVEAMAQVGGVIVTLMPDM--PQGLFVFAGI 101          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_GLOVI ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Gloeobacter violaceus GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGG 652
            ++D  +I+ IL HR+PFLLVDRV+ + PGV AV IKNVTIN+ FF GHFP RP+MPG L++EAMAQVGG+V  Q PE  G
Sbjct:    1 MIDNIEIQKILAHRYPFLLVDRVLVFEPGVRAVGIKNVTINEPFFQGHFPGRPLMPGALLIEAMAQVGGIVCGQLPEAVG 80          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_DESRM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfotomaculum reducens (strain MI-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DIN I+ ILPHR+PFLLVDR++E   G   V IKNVT N+ FFPGHFP  P+MPGVL++EAMAQVG + +L       R    FAGI
Sbjct:    1 MLDINAIQQILPHRYPFLLVDRILEMEEGKRVVGIKNVTANEPFFPGHFPGYPVMPGVLVIEAMAQVGAVAILSMPAYAGR-IALFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CLOBK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain Okra / Type B1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 45/75 (60.00%), Postives = 60/75 (80.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT+N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKRIIPHRYPFLLVDKITELEEGKSAVGYKNVTVNEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACA2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus amyloliquefaciens (strain FZB42) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.010e-21
Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++D  QI++I+PHR+PFLLVDR+ E   G  A   KNVT N++FF GHFPE P+MPGVL+VEA+AQVG + ML  E    R   FFAGI
Sbjct:    1 MLDTQQIKEIIPHRYPFLLVDRITEVEEGKRAAGYKNVTANEDFFNGHFPEYPVMPGVLIVEALAQVGAVAMLIKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHESR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sp. (strain MR-7) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PG S  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDYTPGESLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSDDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHESM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sp. (strain MR-4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PG S  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDYTPGESLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSDDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHESA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sp. (strain ANA-3) GN=fabZ PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PG S  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDYTPGESLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSDDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROMM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9313) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.320e-21
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 2
Query:  431 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            QI  +LPHR+PF LVDRV+ + PG  AVAIKNVT+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGI
Sbjct:    6 QIMGLLPHRYPFALVDRVVLHEPGQRAVAIKNVTLNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVAQMPDL--PKGLFVFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHESH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sediminis (strain HAW-EB3) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            MDI +I + LPHR+PFLL+DRV++Y PG +  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+  +       ++  ++FAGI
Sbjct:    8 MDIKEIMNSLPHRYPFLLIDRVLDYTPGETLHAIKNVTINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAYKTMEAAVTDDSLYYFAGI 97          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNE71.010e-2157.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GLOVI1.010e-2163.75(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESRM1.010e-2157.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOBK1.010e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACA21.010e-2157.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHESR1.320e-2156.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHESM1.320e-2156.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHESA1.320e-2156.04(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMM1.320e-2162.35(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHESH1.723e-2154.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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