CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:51..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CLOB1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_CALS8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.251e-21
Identity = 52/87 (59.77%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  422 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            D+  I  ILPHR+PFLLVDR+IE   G  A  IKNVTIN+ FF GHFP  P+MPGVL+VEAMAQVG + +L  E    +   FFAGI
Sbjct:    3 DVTSILQILPHRYPFLLVDRIIEIEEGKKAKGIKNVTINEPFFQGHFPGNPVMPGVLIVEAMAQVGAVAILSKEEFKGKTP-FFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROM9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9312) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 2
Query:  431 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            +I  +LPHR+PF LVD+VIE  PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI
Sbjct:   16 KILGLLPHRYPFALVDKVIENIPGERAVAVKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACP2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus pumilus (strain SAFR-032) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++D  QI+DI+PHR+PFLLVDR++E      AV IKNVT+N+ FF GHFP  P+MPGVL+VEA+AQV G++ML  E    +    FAGI
Sbjct:    1 MLDAQQIQDIIPHRYPFLLVDRILEVEGEKRAVGIKNVTVNEEFFNGHFPGYPVMPGVLIVEALAQVFGVIMLGKEENKGKIG-LFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_AZOSE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Azoarcus sp. (strain EbN1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGI 682
            MDIN+I   LPHR+PFLLVDRV+E   G   +A+KNVT+N+ FFPGHFP  P+MPGVL+VEAMAQ   L+  +       EN   +FAGI
Sbjct:    1 MDINEILQYLPHRYPFLLVDRVLEIEEGKRILALKNVTMNEPFFPGHFPHHPVMPGVLIVEAMAQAAALLSFKSMGVKPDENSVVYFAGI 90          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: LPXZ_PORGI (Bifunctional enzyme lpxC/fabZ OS=Porphyromonas gingivalis GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFF 673
            +MDIN+I+++LPHR+PFLLVD++IE  P    V +K+V+ N+ FFPGHFP  P+MPGVL VEAMAQVGGL++L      S  + +F
Sbjct:  318 IMDINRIKELLPHRYPFLLVDKIIEVGPDY-IVGVKSVSGNEPFFPGHFPGEPVMPGVLQVEAMAQVGGLLVLNTLTEPSSYSTYF 402          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEPA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fabZ PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ--PEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV+++ PG +  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+  +   E   +   ++FAGI
Sbjct:    8 MDIKEILKFLPHRYPFLLIDRVLDFTPGETLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSEEPSNDALYYFAGI 97          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEHH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella halifaxensis (strain HAW-EB4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ--PEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV+++ PG +  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+  +   E   +   ++FAGI
Sbjct:    8 MDIKEILKFLPHRYPFLLIDRVLDFTPGETLHAIKNVTINEPFFQGHFPVQPVMPGVLILEAMAQATGLLAFKTMSEEPSNDALYYFAGI 97          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila (strain Lens) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 53/91 (58.24%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFFFAGI 682
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+EA+AQ  G+   +  QP+ G    + +FAGI
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLEALAQASGILANLSRQPKEGYEFLH-YFAGI 94          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_DESVV ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGI 682
            +++DI QI  +LPHR+PFLLVDRV+EY PG    A KNVT+N+ FF GHFP  P+MPGVL++EA+AQ GG LV+   +     + F F GI
Sbjct:    7 SILDIRQILGLLPHRYPFLLVDRVVEYVPGDYIKAYKNVTMNEPFFQGHFPGVPVMPGVLIMEALAQAGGILVVKSTDTAVEDKLFLFTGI 97          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_CLOB12.251e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CALS82.251e-2159.77(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROM92.940e-2161.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACP22.940e-2156.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_AZOSE2.940e-2156.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_PORGI3.839e-2155.81Bifunctional enzyme lpxC/fabZ OS=Porphyromonas gin... [more]
FABZ_SHEPA3.839e-2154.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEHH3.839e-2154.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPL3.839e-2158.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESVV3.839e-2154.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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