CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:51..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_DESVH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGI 682
            +++DI QI  +LPHR+PFLLVDRV+EY PG    A KNVT+N+ FF GHFP  P+MPGVL++EA+AQ GG LV+   +     + F F GI
Sbjct:    7 SILDIRQILGLLPHRYPFLLVDRVVEYVPGDYIKAYKNVTMNEPFFQGHFPGVPVMPGVLIMEALAQAGGILVVKSTDTAVEDKLFLFTGI 97          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACCN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF 670
            +++I QI++I+PHR+PFLLVD+V+E   G  AV IKNV+ N+ FF GHFPE  +MPGVL+VEA+AQVG + +L+ E    R  FF
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDQVLEVEEGKRAVGIKNVSANEEFFNGHFPEYAVMPGVLIVEALAQVGAIAILKKEENRGRLAFF 85          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: LPXZ_BACTN (Bifunctional enzyme lpxC/fabZ OS=Bacteroides thetaiotaomicron GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            VMD+N+IR++LPHR+PF LVD+VIE       V IKN+T N+ FF GHFP+ P+MPGVL +EAMAQVGGL++L       R + +F  I
Sbjct:  318 VMDVNRIRELLPHRYPFQLVDKVIEMGASY-IVGIKNITANEPFFQGHFPQEPVMPGVLQIEAMAQVGGLLVLNSVDEPERYSTYFMKI 405          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNWW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=fabZ PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 643
            ++  +I  ILPHR+PFLLVDR+IE  PG  AV IKN+++N+ FFPGHFP  P+MPGVLM+EAMAQVG   +L  E
Sbjct:    6 LNTEEIMKILPHRYPFLLVDRIIELLPGERAVGIKNLSVNEPFFPGHFPGHPVMPGVLMIEAMAQVGACAILCDE 80          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHEON ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella oneidensis GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV+++ PG S  AIKNVTIN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDFTPGESLHAIKNVTINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSDDVPPPGVLYYFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_PROMS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain AS9601) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  434 IRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            I  +LPHR+PF LVD+VIE  PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q +    +  F FAGI
Sbjct:   17 ILGLLPHRYPFALVDKVIENIPGERAVAVKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMQ-NLPKGLFVFAGI 98          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_MARMS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Marinomonas sp. (strain MWYL1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            +MD+N+IR  LPHR+PFLLVDR++E N   S +A KNVTIN+ FF GHFP  P+MPGVL++EAMAQ  G++
Sbjct:    1 MMDVNEIRQYLPHRYPFLLVDRIVEINLNDSIIAYKNVTINEPFFNGHFPNHPVMPGVLIIEAMAQAAGVL 71          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACWK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus weihenstephanensis (strain KBAB4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACSU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus subtilis GN=fabZ PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++D  QI++I+PHR+PFLLVDR+ E   G  A   KNVT N+ FF GHFP+ P+MPGVL+VEA+AQVG + ML  E    R   FFAGI
Sbjct:    1 MLDTQQIKEIIPHRYPFLLVDRITEVEEGKRAKGYKNVTANEEFFNGHFPQYPVMPGVLIVEALAQVGAVAMLIKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACHK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus thuringiensis subsp. konkukian GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_DESVH3.839e-2154.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACCN3.839e-2155.29(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_BACTN5.014e-2155.06Bifunctional enzyme lpxC/fabZ OS=Bacteroides theta... [more]
FABZ_SYNWW5.014e-2161.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEON5.014e-2154.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMS5.014e-2161.45(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MARMS5.014e-2161.97(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACWK5.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACSU5.014e-2156.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACHK5.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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