CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACCR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACCQ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain Q1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACC7 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain AH187) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACC4 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain B4264) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACC3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain 03BB102) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACC2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain G9842) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACC1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain ATCC 10987) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACAH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus thuringiensis (strain Al Hakam) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            +++I QI++I+PHR+PFLLVD+++E + G  AV IKNV+ N+ FF GHFP+  +MPGVL+VEA+AQVG + +L+ E    R   FFAGI
Sbjct:    1 MLNIEQIKEIIPHRYPFLLVDKILEVDEGKRAVGIKNVSANEEFFNGHFPDYAVMPGVLIVEALAQVGAVAVLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ALCBS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fabZ PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            MDI ++R+ LPHR+PFLL+DRV+   PG    A+KNVTIN+ FF GHFPE PIMPGVL++EAMAQ  G++
Sbjct:    1 MDIKEVREYLPHRYPFLLIDRVLNIEPGKRIEALKNVTINEPFFNGHFPEEPIMPGVLIIEAMAQAAGIL 70          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SHESW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sp. (strain W3-18-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  419 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGI 682
            MDI +I   LPHR+PFLL+DRV++Y PG S  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+    +  +V      ++FAGI
Sbjct:    8 MDITEILKYLPHRYPFLLIDRVLDYTPGESLHAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLLAFKTMSNDVPPPGVLYYFAGI 98          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_BACCR5.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACCQ5.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACC75.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACC45.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACC35.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACC25.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACC15.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACAH5.014e-2153.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ALCBS5.014e-2162.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHESW6.549e-2154.95(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
back to top