CN181895

Overview
NameCN181895
Unique NameCN181895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DALR+I NAE+R K  V ++P S V   FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   E+E +T + LP+RQ+GYVV+TT  G++DHEEA R++VGG++LG+F
Sbjct:    6 VLADALRSICNAEKRCKRQVLIRPCSKVTVKFLMVMMKHGYIGEFEIVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 58/124 (46.77%), Postives = 90/124 (72.58%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +  + LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 58/124 (46.77%), Postives = 90/124 (72.58%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +  + LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 58/124 (46.77%), Postives = 90/124 (72.58%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +  + LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 58/124 (46.77%), Postives = 90/124 (72.58%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +  + LP+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 59/124 (47.58%), Postives = 89/124 (71.77%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DAL+ I NAE+RGKA V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +  + LP+RQ+G++V+TT  G++DHEEA R++ GG+ LG+F
Sbjct:    6 VLADALKCINNAEKRGKAQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VK  ++E +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLTGRLNKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVAGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 61/125 (48.80%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V L+P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VK  +IE +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 57/124 (45.97%), Postives = 89/124 (71.77%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L DAL++I NAE+RGK  V ++P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV+ +++E +  +  P+RQ+G++V+TT  G++DHEEA R++ GG++LG+F
Sbjct:    6 VLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 58/125 (46.40%), Postives = 89/125 (71.20%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +LND L +IVNAER+GK  V ++P S V+  FL +M  + YI +F++ D HR GKI ++L+GR+N C  ++ R DV   EIE +  + LP+RQ+G++V+TT  G++DH EA  R+ GG++LG+F+
Sbjct:    6 VLNDCLNSIVNAERQGKRQVLVRPSSKVIVKFLEVMMKKRYIGEFEIVDDHRSGKIVIDLIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
The following BLAST results are available for this feature:
BLAST of CN181895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS15A_STRPU8.608e-2950.8140S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS15A_RAT1.468e-2846.7740S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_MOUSE1.468e-2846.7740S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_HUMAN1.468e-2846.7740S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_BOVIN1.468e-2846.7740S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS15A_ICTPU1.918e-2847.5840S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS22_ASHGO4.272e-2847.2040S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]
RS22B_YEAST4.272e-2848.8040S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS15A_PONAB4.272e-2845.9740S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15A_DICDI4.272e-2846.4040S ribosomal protein S15a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181895 ID=CN181895; Name=CN181895; organism=Citrus sinensis; type=EST; length=686bp
TTTTGAAACAATGCTGCACTTTTAAATTACAATAAATCACAACTGGTCCA
TGAAGATACAAAACACTTCATGAGGAGAGGTTGTTTCACCTCCTGTTCTA
TCATTCAGCTGAAATACTACAAAATTGAAAAGGTCTCTACTTAAAAGTTT
TAACACATTCTTGCAGGCTGCAACTCTGTTAAAGAACTCTTCCTTCCTTT
CCAAATTGTTTGGATGGCAAAGATGTCTAATGAAAATAACCGAGAACTTG
GCCACCCACATTCCGCCTCAGGGCCTCTTCATGGTCCAAAACACCATCCG
GAGTTGTTATCACAACATAGCCCCACTGTCTAGTTGGAAGAGCATGCACC
GTGTACCCTTCAATTTCCCTTGCCTTGACATCCTGCCTATAAGTGAGACC
TCGACAATCATTTACCCTGCCTAGTAGTTCAACTTTGATCTTGCCCACCC
TATGTGGGTCATACAACTGAAAATCCTTGATGTATCCTCGATATTTCATG
ATATTAAGAAAAGAAGACATGACAGTAGAGATTGGCTGCAACTCAACAGT
AGCTTTGCCCCTCCTCTCTGCATTCACTATTGCTCTCAAAGCATCATTTA
ATATCCTCCTCCCCATCACCGTCTGCACTTCAACGATGGCGGCAGCGACG
GATTCTAGGGTTTGTGACAATCTTCACGAGGAATGG
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