CN181895

Overview
NameCN181895
Unique NameCN181895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_NEUCR (40S ribosomal protein S22 OS=Neurospora crassa GN=rps-22 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 58/125 (46.40%), Postives = 89/125 (71.20%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L+DAL +I NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +V+  E+E + V  LP RQ+GYV++TT  G++DHEEA R++V G+++G+F+
Sbjct:    6 VLHDALNSINNAEKAGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEEVDDHRSGKIVVQLNGRMNKCGVISPRYNVRLAELEKWVVKLLPARQFGYVILTTSAGIMDHEEARRKHVSGKIIGFFY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.287e-28
Identity = 60/125 (48.00%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VK  +IE +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22A_YEAST (40S ribosomal protein S22-A OS=Saccharomyces cerevisiae GN=RPS22A PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.287e-28
Identity = 60/125 (48.00%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VK  +IE +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_KLUMA (40S ribosomal protein S22 OS=Kluyveromyces marxianus GN=RPS22 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VK  ++E +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKISDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_KLULA (40S ribosomal protein S22 OS=Kluyveromyces lactis GN=RPS22 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  ++ R +VK  ++E +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVSGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 60/125 (48.00%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L DAL AI NAE+ GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI V+L GR+N C  +  R +VK  +IE +T + LP RQ+GYV++TT  G++DHEEA R++V G++LG+ +
Sbjct:    6 VLADALNAINNAEKTGKRQVLIRPSSKVIIKFLTVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -2
Query:  233 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 604
            +L  ALR I NAE+R K  V ++P S V   FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   ++E +T + LP+RQ+GYVV+TT  G++DHEEA R++VGG++LG+F
Sbjct:    6 VLAAALRCICNAEKRCKRQVLIRPCSKVTIKFLMVMIKHGYIGEFEVVDDHRGGKIIVNLNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFF 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.062e-26
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +LND L++I NA RRGK  V ++P S V+  FL++M+  GYI +F++ D HR GKI V+L GR+N    ++ R +V+   IE +  + LP+R  G +V+TT  G+LDHEEA R+NVGG++LGY +
Sbjct:    6 VLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L D L  IVNAERRG+  V ++P S V+  FL +M+  GYI +F   D HR GKI ++L GR+N C  ++ R +VK ++IE +    LP+RQ G +V+TT  G++ H EA  ++ GG++LG+F+
Sbjct:    6 VLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L DAL  I NAE  GK +  ++P S ++ + L +M  RGYI DF+  +  + G   VEL+GR+N C  +  R  V   E E +    LP + +G +++TTP GV+   EA   NVGGQ+L + +
Sbjct:    7 LADALSIIKNAEAVGKDSCTIRPASKLIGNVLKVMNDRGYIGDFEFVEDGKAGVYTVELIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130          
The following BLAST results are available for this feature:
BLAST of CN181895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS22_NEUCR5.580e-2846.4040S ribosomal protein S22 OS=Neurospora crassa GN=... [more]
RS22_CANGA7.287e-2848.0040S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS22A_YEAST7.287e-2848.0040S ribosomal protein S22-A OS=Saccharomyces cerev... [more]
RS22_KLUMA9.517e-2847.2040S ribosomal protein S22 OS=Kluyveromyces marxian... [more]
RS22_KLULA9.517e-2847.2040S ribosomal protein S22 OS=Kluyveromyces lactis ... [more]
RS22_CANAL1.623e-2748.0040S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS15A_PARLI4.723e-2749.1940S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS22_AGABI3.062e-2647.2040S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS22_SCHPO4.421e-2544.0040S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS8_METBU2.125e-1938.7130S ribosomal protein S8P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181895 ID=CN181895; Name=CN181895; organism=Citrus sinensis; type=EST; length=686bp
TTTTGAAACAATGCTGCACTTTTAAATTACAATAAATCACAACTGGTCCA
TGAAGATACAAAACACTTCATGAGGAGAGGTTGTTTCACCTCCTGTTCTA
TCATTCAGCTGAAATACTACAAAATTGAAAAGGTCTCTACTTAAAAGTTT
TAACACATTCTTGCAGGCTGCAACTCTGTTAAAGAACTCTTCCTTCCTTT
CCAAATTGTTTGGATGGCAAAGATGTCTAATGAAAATAACCGAGAACTTG
GCCACCCACATTCCGCCTCAGGGCCTCTTCATGGTCCAAAACACCATCCG
GAGTTGTTATCACAACATAGCCCCACTGTCTAGTTGGAAGAGCATGCACC
GTGTACCCTTCAATTTCCCTTGCCTTGACATCCTGCCTATAAGTGAGACC
TCGACAATCATTTACCCTGCCTAGTAGTTCAACTTTGATCTTGCCCACCC
TATGTGGGTCATACAACTGAAAATCCTTGATGTATCCTCGATATTTCATG
ATATTAAGAAAAGAAGACATGACAGTAGAGATTGGCTGCAACTCAACAGT
AGCTTTGCCCCTCCTCTCTGCATTCACTATTGCTCTCAAAGCATCATTTA
ATATCCTCCTCCCCATCACCGTCTGCACTTCAACGATGGCGGCAGCGACG
GATTCTAGGGTTTGTGACAATCTTCACGAGGAATGG
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