CN181895

Overview
NameCN181895
Unique NameCN181895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 48/124 (38.71%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L DA+  I N E  G     ++P S ++   L +M+  GYI  F+  D  R GK  V+L+GR+NDC  +  R  VK  E E +    LP R +G +++TTP+GV+ H EA  R +GG++L Y +
Sbjct:    7 LADAMATIKNNEMVGNKECVIEPASKLIGRVLKVMQEYGYIGSFEFIDDGRSGKFLVKLVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 46/124 (37.10%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N+E+ GK+ V ++P S ++   L +M+  GYI +F+  D  R G  +V+LLG+VN    +  R  VKA+E E +    LP  ++G +V++T  GV+ H+EAL + +GG+++ Y +
Sbjct:    7 LANALSHITNSEKVGKSEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 44/124 (35.48%), Postives = 76/124 (61.29%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+L+G++N    +  R  VKARE E +    LP  ++G ++++T  GV+ H+EA+ + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 47/124 (37.90%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N ER GK  V ++P S ++   L +M+  GYI +F+  +  R G  KVEL+G++N C  +  R  VK    E +    LP R +G ++++T  GV+ HEEA +R +GG++L Y +
Sbjct:    7 LANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N+ER GK  V ++P S ++   L +M   GYI +F+L D  R G  +V+L+G++N    +  R  VKAR+ E +    LP  ++G ++++T  GV+ H+EAL + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMLENGYIGEFELIDDGRAGIYRVQLIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  236 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 595
            DA+ AI NA   GK  V ++P S +    L +M+  GYI  F+  D  R G+ ++ L G +N C  +T R  VK  ++E + +  LP + +G +++TT  GV+ HE+A +  VGG++LGY
Sbjct:    9 DAMSAIKNAGDTGKLAVTVEPASRLFGDMLKVMQEYGYITGFEKIDDGRGGQFQIALSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGY 128          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = -2
Query:  230 GRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 613
            G   L +AL  + NAE  G  + E+QP S V+ S L +   RGYI  F+  D  + G+ +VEL G +N+C  +  R    A E E +    LP R +G +++TT  GV+ H EA    +GGQV+ Y +
Sbjct:    3 GNDPLANALSGVDNAESVGHLSHEIQPASNVIGSVLEVFYDRGYINGFEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQVIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I+N E RGK    + P S ++ + L+ +K  GYI DF+L D  R GKI V LLGR+N    +  R  VK  E E +    LP+R  G ++++TP GV+ H EA  + +GG +L Y +
Sbjct:    6 LANALSTIMNNEVRGKKQCVIYPSSKLIVAVLDTLKRSGYIGDFELIDDGRGGKIVVNLLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+LLGR+N    +  R  VK  E E +    LP  ++G ++++T  GV+ H+EA+ + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            LND +  I NA R GK+ V + P S ++   L +M+   YIK F++ +  R GK +VEL   +N+C  +  R  VK   IE Y    LP + +G +++TT  G++ H EA +  +GG++L Y +
Sbjct:    6 LNDVINTIKNASRIGKSEVIIGPASVMIGRILKVMQDYNYIKSFEVIEEERGGKFRVELSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
The following BLAST results are available for this feature:
BLAST of CN181895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METKA2.776e-1938.7130S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_THESM3.625e-1937.1030S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_THEON4.734e-1935.4830S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_METJA4.734e-1937.9030S ribosomal protein S8P OS=Methanocaldococcus ja... [more]
RS8_PYRKO8.076e-1936.2930S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]
RS8_METLZ8.076e-1937.5030S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_HALWD8.076e-1937.5030S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_THEPD1.799e-1840.3230S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_PYRFU2.350e-1835.4830S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]
RS8_PICTO2.350e-1836.2930S ribosomal protein S8P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181895 ID=CN181895; Name=CN181895; organism=Citrus sinensis; type=EST; length=686bp
TTTTGAAACAATGCTGCACTTTTAAATTACAATAAATCACAACTGGTCCA
TGAAGATACAAAACACTTCATGAGGAGAGGTTGTTTCACCTCCTGTTCTA
TCATTCAGCTGAAATACTACAAAATTGAAAAGGTCTCTACTTAAAAGTTT
TAACACATTCTTGCAGGCTGCAACTCTGTTAAAGAACTCTTCCTTCCTTT
CCAAATTGTTTGGATGGCAAAGATGTCTAATGAAAATAACCGAGAACTTG
GCCACCCACATTCCGCCTCAGGGCCTCTTCATGGTCCAAAACACCATCCG
GAGTTGTTATCACAACATAGCCCCACTGTCTAGTTGGAAGAGCATGCACC
GTGTACCCTTCAATTTCCCTTGCCTTGACATCCTGCCTATAAGTGAGACC
TCGACAATCATTTACCCTGCCTAGTAGTTCAACTTTGATCTTGCCCACCC
TATGTGGGTCATACAACTGAAAATCCTTGATGTATCCTCGATATTTCATG
ATATTAAGAAAAGAAGACATGACAGTAGAGATTGGCTGCAACTCAACAGT
AGCTTTGCCCCTCCTCTCTGCATTCACTATTGCTCTCAAAGCATCATTTA
ATATCCTCCTCCCCATCACCGTCTGCACTTCAACGATGGCGGCAGCGACG
GATTCTAGGGTTTGTGACAATCTTCACGAGGAATGG
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