CN181895

Overview
NameCN181895
Unique NameCN181895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_AERPE (30S ribosomal protein S8P OS=Aeropyrum pernix GN=rps8p PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHA---LPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +A+ AI NAE RGK    + P S ++++ L I++  GYI  F+  D  R GK +V+LLGR+ND   +  R  V  RE+     H    L +R  G ++++TP GV+ H EAL+R +GG V+ Y +
Sbjct:    7 LANAMAAIKNAEMRGKGEAIIMPSSKLIANVLRILEKEGYIGGFEYIDDGRWGKFRVKLLGRINDIGVVKPRTPVSYRELAKMPEHLRKYLASRDVGLLILSTPQGVMTHREALKRKIGGIVIAYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 45/124 (36.29%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N+ER GK  + ++P S ++   L +M+  GYI +F+  D  R G  +V+LLGR+N    +  R  VKA E E +    LP  ++G ++++T  GV+ H+EA  R +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKREIYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 44/124 (35.48%), Postives = 75/124 (60.48%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+LLG++N    +  R  VKAR+ E +    LP  ++G ++++T  GV+ H+EA  + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METS5 (30S ribosomal protein S8P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 46/127 (36.22%), Postives = 76/127 (59.84%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L++AL ++ N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+L+GR+N C  +T R  +  RE   +  Y    LP+++ G ++++TP GV+ H+EA R+  GG VLGY +
Sbjct:    7 LSNALSSLYNNEMRRNKQAIIMPSSKLIVNVLRVMQKEGYVGEFEYIDDGRWGKILVQLMGRINKCGAITPRYSLTYREMISLPDYIRRYLPSKEIGVIIVSTPKGVMTHKEAARQRTGGIVLGYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  + N ER GK    ++P S ++   L +M+  GYI +F+  +  R G  KVEL+G++N C  +  R  VK  E E +    LP R +G ++++T  G++ H EA  + +GG+++ Y +
Sbjct:    7 LANALNHLTNCERVGKKVFYIKPASKLIGRVLKVMQDHGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_ARCFU (30S ribosomal protein S8P OS=Archaeoglobus fulgidus GN=rps8p PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L++A+ AI NAE  G+   E++P S ++ + L +MK  GYIK F+  + HR GK  VEL G +NDC  +  R      E E Y    LP R +G ++++T  GV+  ++A ++ +GG +L Y +
Sbjct:    6 LSNAMIAIKNAEMVGEKKCEIKPASKLIGNVLKVMKDYGYIKGFEYVENHRGGKFIVELSGNINDCGAIRPRFSSSVTEYEMYEKRYLPARDFGILIVSTTKGVMSQKDARKQRLGGVLLAYVY 129          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_HYPBU (30S ribosomal protein S8P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps8p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREI---EGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +A+ AIVNAE R K  V + P S ++++ L +M+  GYI +F+  D  R GKI+V LLGR+N    +  R  VK +++     +    LP+R  G ++I+T  GV+ H EA++R +GG +L Y +
Sbjct:    7 LANAMAAIVNAEMRAKPEVIIMPASKLIANVLRVMQREGYIGEFEYIDDGRWGKIRVRLLGRINKAGVIKPRFSVKYKDLIRMPDWLRKYLPSRDIGILIISTSQGVMSHREAIQRRIGGVLLAYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 42/124 (33.87%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I NAE  GK    + P S ++ + L +M+ +GY+ +F+  D  + G++KV+L+G++N C  +  R  V   E+E +    LP R +G +++TT  GV+ H +A +  +GG++L Y +
Sbjct:    7 LANALSVIKNAETTGKTDCVIDPASKIIGNVLKVMQDQGYVGEFEFVDNGKAGQLKVKLIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 43/122 (35.25%), Postives = 74/122 (60.66%), Query Frame = -2
Query:  236 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 601
            L +AL  I N E  GK+   ++P S ++   LN+M+  GYI +F+  +  R G  KVEL+G++N C  +  R  VK +E E +    LP + +G ++++TP G++ H+EA  + +GG+++ Y
Sbjct:    7 LANALNHISNCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRLISY 128          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L DAL  I N E + K +  + P S ++   L+ M+   YI +F+  D +R G+ KVEL G +N C  +  R  VK  E E +    LP + +G +++TTP+G++ H EA  R +GG++L Y +
Sbjct:    7 LADALTNIRNNELQVKDSCVISPASKLIGEVLSTMQKENYIGNFEYIDDNRAGQFKVELEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
The following BLAST results are available for this feature:
BLAST of CN181895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_AERPE2.350e-1839.3730S ribosomal protein S8P OS=Aeropyrum pernix GN=r... [more]
RS8_PYRHO3.069e-1836.2930S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_PYRAB3.069e-1835.4830S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_METS53.069e-1836.2230S ribosomal protein S8P OS=Metallosphaera sedula... [more]
RS8_METIG3.069e-1833.8730S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_ARCFU3.069e-1837.1030S ribosomal protein S8P OS=Archaeoglobus fulgidu... [more]
RS8_HYPBU4.008e-1838.5830S ribosomal protein S8P OS=Hyperthermus butylicu... [more]
RS8_UNCMA6.836e-1833.8730S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_METTL6.836e-1835.2530S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_METS38.929e-1836.2930S ribosomal protein S8P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181895 ID=CN181895; Name=CN181895; organism=Citrus sinensis; type=EST; length=686bp
TTTTGAAACAATGCTGCACTTTTAAATTACAATAAATCACAACTGGTCCA
TGAAGATACAAAACACTTCATGAGGAGAGGTTGTTTCACCTCCTGTTCTA
TCATTCAGCTGAAATACTACAAAATTGAAAAGGTCTCTACTTAAAAGTTT
TAACACATTCTTGCAGGCTGCAACTCTGTTAAAGAACTCTTCCTTCCTTT
CCAAATTGTTTGGATGGCAAAGATGTCTAATGAAAATAACCGAGAACTTG
GCCACCCACATTCCGCCTCAGGGCCTCTTCATGGTCCAAAACACCATCCG
GAGTTGTTATCACAACATAGCCCCACTGTCTAGTTGGAAGAGCATGCACC
GTGTACCCTTCAATTTCCCTTGCCTTGACATCCTGCCTATAAGTGAGACC
TCGACAATCATTTACCCTGCCTAGTAGTTCAACTTTGATCTTGCCCACCC
TATGTGGGTCATACAACTGAAAATCCTTGATGTATCCTCGATATTTCATG
ATATTAAGAAAAGAAGACATGACAGTAGAGATTGGCTGCAACTCAACAGT
AGCTTTGCCCCTCCTCTCTGCATTCACTATTGCTCTCAAAGCATCATTTA
ATATCCTCCTCCCCATCACCGTCTGCACTTCAACGATGGCGGCAGCGACG
GATTCTAGGGTTTGTGACAATCTTCACGAGGAATGG
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