CN181895

Overview
NameCN181895
Unique NameCN181895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_SULIM (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_SULIL (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_SULIK (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_SULIA (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain M.16.27) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_STAMF (30S ribosomal protein S8P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIE---GYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I NAE R K+   + P S ++ + L +M+  GYI +F+  D  R GKIKV+LLGR+N    +  R  VK R++E    +    LP    G ++++TP GVL H+EA+ +  GG +L Y +
Sbjct:    7 LANALATIQNAEMRAKSEALIWPASKLIINVLRVMQREGYIGEFEYIDDGRWGKIKVQLLGRINKTGVIKPRFPVKLRDLERMPHWLRKYLPAYNIGILILSTPHGVLSHKEAIAKKTGGVLLAYVY 133          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  I N E  GK T  L+P S ++   L +M+ +GYI +F+  +  + G  KV L+G++N C  +  R  VK +E E +    LP + +G ++++TP G++ H+EA    +GG+++ Y +
Sbjct:    7 LANALNHISNCENVGKNTAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 41/124 (33.06%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C  +  R  VK  + E +    LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRLISYIY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_DESK1 (30S ribosomal protein S8P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  236 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGY---TVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGY 601
            L +AL AI NAE R K  V + P S +  + L +++  GYI +F+  D  R GKIK++LLGR+N    +  R  VK RE+  +       LP    G ++++TP GVL H+EA+ +  GG +L Y
Sbjct:    7 LANALSAIYNAEIRAKKEVVVWPASKLTLNVLKVLQREGYIGEFEYIDDGRWGKIKIQLLGRINKIGVIKPRYPVKHRELAEFPEWLKRYLPAYNIGVIIVSTPYGVLSHKEAVEKQTGGVLLAY 131          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  230 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 604
            +L++AL ++ NAE RG   V + P S ++ + L +M+  GY+ +F+     R GK  V+LLGR+ND   +  R  VK  E++ +    LP RQ G +++TT  GV+ H EA    VGG ++ Y +
Sbjct:    6 VLSNALMSVKNAESRGDRQVIIWPSSKLIGNVLRVMQRYGYVGEFEYVYDGRGGKYVVQLLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
BLAST of CN181895 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 41/124 (33.06%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  230 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 601
            L +AL  + N E  GK    L+P S ++   L +M+ +GYI +F+  +  + G  KV+L+G++N C  +  R  VK +E E +    LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
The following BLAST results are available for this feature:
BLAST of CN181895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_SULIM7.559e-1736.2230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIL7.559e-1736.2230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIK7.559e-1736.2230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIA7.559e-1736.2230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_STAMF7.559e-1738.5830S ribosomal protein S8P OS=Staphylothermus marin... [more]
RS8_METVO7.559e-1733.8730S ribosomal protein S8P OS=Methanococcus voltae ... [more]
RS8_METM67.559e-1733.0630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_DESK17.559e-1739.2030S ribosomal protein S8P OS=Desulfurococcus kamch... [more]
RS8_CALMQ7.559e-1736.8030S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
RS8_METVS1.289e-1633.0630S ribosomal protein S8P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181895 ID=CN181895; Name=CN181895; organism=Citrus sinensis; type=EST; length=686bp
TTTTGAAACAATGCTGCACTTTTAAATTACAATAAATCACAACTGGTCCA
TGAAGATACAAAACACTTCATGAGGAGAGGTTGTTTCACCTCCTGTTCTA
TCATTCAGCTGAAATACTACAAAATTGAAAAGGTCTCTACTTAAAAGTTT
TAACACATTCTTGCAGGCTGCAACTCTGTTAAAGAACTCTTCCTTCCTTT
CCAAATTGTTTGGATGGCAAAGATGTCTAATGAAAATAACCGAGAACTTG
GCCACCCACATTCCGCCTCAGGGCCTCTTCATGGTCCAAAACACCATCCG
GAGTTGTTATCACAACATAGCCCCACTGTCTAGTTGGAAGAGCATGCACC
GTGTACCCTTCAATTTCCCTTGCCTTGACATCCTGCCTATAAGTGAGACC
TCGACAATCATTTACCCTGCCTAGTAGTTCAACTTTGATCTTGCCCACCC
TATGTGGGTCATACAACTGAAAATCCTTGATGTATCCTCGATATTTCATG
ATATTAAGAAAAGAAGACATGACAGTAGAGATTGGCTGCAACTCAACAGT
AGCTTTGCCCCTCCTCTCTGCATTCACTATTGCTCTCAAAGCATCATTTA
ATATCCTCCTCCCCATCACCGTCTGCACTTCAACGATGGCGGCAGCGACG
GATTCTAGGGTTTGTGACAATCTTCACGAGGAATGG
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