CN181894

Overview
NameCN181894
Unique NameCN181894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181894_ssr39 microsatellite CN181894_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.108e-18
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L+DAL  I NAE  G  T  + P S ++ S L +   RGYI  F+  D  + G+ +VEL G +N+C  +  R  V A   E +    LP R +G +V+TT  G++ H EA    +GGQV+ Y +
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.108e-18
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L+DAL  I NAE  G  T  + P S ++ S L +   RGYI  F+  D  + G+ +VEL G +N+C  +  R  V A   E +    LP R +G +V+TT  G++ H EA    +GGQV+ Y +
Sbjct:    7 LSDALSGIDNAESVGHLTHTVAPASNMVGSVLEVFYDRGYIDGFEFVDNGKAGRFEVELKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.108e-18
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  154 GRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            G     +AL  + NAE  G  +  ++P S ++ S L ++  RGY+  F+  D  + GK +VEL G +N+C  +  R    A E E +    LP R +G +++TT  GV+ H EA    +GGQV+ Y +
Sbjct:    3 GNDPFTNALAGMDNAESVGHLSYTVEPASNIIGSVLEVLYDRGYVDGFEYVDDGKAGKFEVELKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.059e-17
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  I N E RG     + P S ++   L  M+  GYI +F+  D  R GK  VEL G +N C  +  R  VK  E E +    LP + +G ++++TP+G++ H+EA  R +GG++L Y +
Sbjct:    7 LANALTNIRNNEIRGNVKCRITPASKLIGRVLRTMQKEGYIGEFEYVDDGRAGKFIVELEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.383e-17
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +L++AL AI NAE  GK  V + P++ ++   L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  VK REI  +    LP RQ G +VI+T  GV+ H EA  + +GG +L Y +
Sbjct:    6 LLSNALTAIKNAEAMGKRQVVIWPVNKLIYYTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.383e-17
Identity = 42/122 (34.43%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  172 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            D + A+ NA   GK+ V ++P S ++ + L IM+  GYI  F+  +  R G++KV L G++N C  +  R  V+  E+E +    LP + +G ++++T  GV+ H +A R  +GG++LGY +
Sbjct:    9 DGMSALKNAGDTGKSEVTIEPASKLLGAMLRIMQDAGYIAGFEFIEDGRGGQLKVHLTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.806e-17
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L  AL  + NAE  G     +QP S  + S L +   RGY+  FQ  D  + G+ +VEL G +N+C  +  R    A E E +    LP R +G +++TT  GV+ H EA  + +GGQV+ Y +
Sbjct:    7 LASALSGLDNAESVGHLEQTIQPASNEIGSVLEVFYDRGYVDGFQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQVIAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.806e-17
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L DA+  I NAE  GK    ++P S +++  L +M   GYI +F+  D  + G  KV+LLGR+N C  +  R  +K  E+E +    LP R +G ++++T  GV+ H +A  R +GG +L Y +
Sbjct:    6 LADAMSTIKNAENVGKPECIIKPASKLIAMTLKVMADLGYIGEFEFIDDGKSGMFKVKLLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.359e-17
Identity = 42/124 (33.87%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  I N+ER GK  V ++P S ++   L +M+  GYI +F+  D  R G  +V+L+G++N    +  R  VKA+  E +    LP  ++G ++++T  GV+ H+EA  + +GG+++ Y +
Sbjct:    7 LANALSHITNSERVGKKEVYIKPASKLIGEVLRVMQENGYIGEFEFIDDGRAGIYRVQLIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  172 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            DA+ A+ NA   GK    L+P S ++ + L IM+  GYI  F + D  R G+ +V L GR+N C  +T R  V   E+E +    LP + +G ++++T  GVL H +A +  +GG++LG+ +
Sbjct:    9 DAMSALKNAGDCGKPECILEPSSKLLGAMLRIMQDAGYIGSFDMIDDGRGGQFRVHLSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
The following BLAST results are available for this feature:
BLAST of CN181894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_HALSA8.108e-1837.9030S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALS38.108e-1837.9030S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALLT8.108e-1834.3830S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_METTH1.059e-1736.2930S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_PYRCJ1.383e-1738.4030S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_METB61.383e-1734.4330S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_NATPD1.806e-1736.2930S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_METTP1.806e-1736.2930S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_THEGJ2.359e-1733.8730S ribosomal protein S8P OS=Thermococcus gammatol... [more]
RS8_METPE3.081e-1736.0730S ribosomal protein S8P OS=Methanosphaerula palu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181894 ID=CN181894; Name=CN181894; organism=Citrus sinensis; type=EST; length=648bp
TTAGTATAGCCAGCCATTGCCCGTCGCCGTAGCCACCACTGCTGCTGCTG
CCGCTGCCGCTGTGTCACCGTCGCCCTCCGCCATTCCTCGTGAAGATTGT
CACAAACCCTAGAATCCGTCGCTGCCGCCATCGTTGAAGTGCAGACGGTG
ATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGAATGCAGA
GAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACTGTCATGT
CTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGATTTTCAG
TTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTACTAGGCAG
GGTAAATGATTGTCGAGGTCTCACTTATAGGCAGGATGTCAAGGCAAGGG
AAATTGAAGGGTACACGGTGCATGCTCTTCCAACTAGACAGTGGGGCTAT
GTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGGCCCTGAG
GCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACATCTTTGC
CATCCAAACAATTTGGAAAGGAAGGAAGAGTTCTTTAACAGAGTTGCAGC
CTGCCAGAATGTGTTAAAACTTTTAAGTAGAGACCTTTTCAATTTTTG
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