CN181894

Overview
NameCN181894
Unique NameCN181894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181894_ssr39 microsatellite CN181894_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METMP (30S ribosomal protein S8P OS=Methanococcus maripaludis GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 41/124 (33.06%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C  +  R  VK  + E +    LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METM5 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.081e-17
Identity = 41/124 (33.06%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C  +  R  VK  + E +    LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_SULSO (30S ribosomal protein S8P OS=Sulfolobus solfataricus GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYVRRYLPSKEIGIIIVSTSKGVMSHKEAARLRIGGVALGYVY 133          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-17
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L DAL  I N E +G  +  ++P S ++   L+ M+   YI +F+L D  + G   VEL+G +N C  +  R  VK  E E Y    LP + +G +++TTP GV+ H EA    +GG++L Y +
Sbjct:    7 LADALTNIRNNELQGNDSCVIKPASKLIGHVLSTMQKENYIGNFELVDDGKAGIFNVELVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRLLVYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +L++AL  I NAE  GK  V + P++ ++   L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  VK REI  +    LP RQ G +VI+T  GV+ H EA  + +GG +L Y +
Sbjct:    6 LLSNALIQIKNAEAMGKRQVAIWPVNKLIYYTLRVLQRHGYVGEVEYIDDGRGGKYVVQLLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_PYRIL (30S ribosomal protein S8P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +L++AL  I NAE  GK  V + P++ ++   L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  VK REI  +    LP RQ G +VI+T  GV+ H EA  R +GG +L Y +
Sbjct:    6 LLSNALIQIKNAEIMGKKQVVIWPVNKLIYHTLRVLQRYGYVGEIEYIDDGRGGKYVVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVMSHIEAKERKIGGVLLAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 41/122 (33.61%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  172 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            DA+  I NA   GK  V ++P S ++ + L +M+  G+I  F+  D  R G+ +V+L G +N C  ++ R  V   ++E +    LP + +G ++++T  GV+ H EA    +GGQ+LGY +
Sbjct:    9 DAMSTIKNAGDAGKGEVIVEPASKLLGAMLRVMQENGFISGFEFIDDGRGGQFRVQLSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.256e-17
Identity = 41/124 (33.06%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  + N E  GK    L+P S ++   LN+M+ +GYI +F+  +  + G  KV+L+G++N C  +  R  VK  + E +    LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_SULIY (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.864e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_SULIN (30S ribosomal protein S8P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps8p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.864e-17
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL +I N E R      + P S ++ + L +M+  GY+ +F+  D  R GKI V+LLGRVN C  +T R  +  R+   +  Y    LP+++ G ++++T  GV+ H+EA R  +GG  LGY +
Sbjct:    7 LANALTSIYNNEMRRNKQAIIMPASKLVINVLRVMQKEGYVGEFEYIDDGRWGKITVQLLGRVNKCGPITPRYPLSYRQMIALPDYIRRYLPSKEIGIIIVSTSKGVMSHKEAARMRLGGVALGYVY 133          
The following BLAST results are available for this feature:
BLAST of CN181894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METMP3.081e-1733.0630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METM53.081e-1733.0630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_SULSO4.024e-1736.2230S ribosomal protein S8P OS=Sulfolobus solfataric... [more]
RS8_METST4.024e-1736.2930S ribosomal protein S8P OS=Methanosphaera stadtm... [more]
RS8_THENV5.256e-1737.6030S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_PYRIL5.256e-1738.4030S ribosomal protein S8P OS=Pyrobaculum islandicu... [more]
RS8_METMJ5.256e-1733.6130S ribosomal protein S8P OS=Methanoculleus marisn... [more]
RS8_METM75.256e-1733.0630S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_SULIY6.864e-1736.2230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]
RS8_SULIN6.864e-1736.2230S ribosomal protein S8P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181894 ID=CN181894; Name=CN181894; organism=Citrus sinensis; type=EST; length=648bp
TTAGTATAGCCAGCCATTGCCCGTCGCCGTAGCCACCACTGCTGCTGCTG
CCGCTGCCGCTGTGTCACCGTCGCCCTCCGCCATTCCTCGTGAAGATTGT
CACAAACCCTAGAATCCGTCGCTGCCGCCATCGTTGAAGTGCAGACGGTG
ATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGAATGCAGA
GAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACTGTCATGT
CTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGATTTTCAG
TTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTACTAGGCAG
GGTAAATGATTGTCGAGGTCTCACTTATAGGCAGGATGTCAAGGCAAGGG
AAATTGAAGGGTACACGGTGCATGCTCTTCCAACTAGACAGTGGGGCTAT
GTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGGCCCTGAG
GCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACATCTTTGC
CATCCAAACAATTTGGAAAGGAAGGAAGAGTTCTTTAACAGAGTTGCAGC
CTGCCAGAATGTGTTAAAACTTTTAAGTAGAGACCTTTTCAATTTTTG
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