CN181894

Overview
NameCN181894
Unique NameCN181894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181894_ssr39 microsatellite CN181894_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.171e-16
Identity = 41/124 (33.06%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  + N E  GK    L+P S ++   L +M+ +GYI +F+  +  + G  KV+L+G++N C  +  R  VK +E E +    LP + +G ++++TP G++ H+EA    VGG+++ Y +
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_PYRAR (30S ribosomal protein S8P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  163 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            IL++AL  I NAE  GK  V + P++ +    L +++  GY+ + +  D  R GK  V+LLG++ND   +  R  VK REI  +    LP RQ G +VI+T  GV+ H EA  + +GG +L Y +
Sbjct:    6 ILSNALIQIKNAEVMGKRQVTIWPVNKLTYYTLRVLQRYGYVGEIEYVDDGRGGKYIVQLLGKINDIGPIRPRYPVKYREIVQWEQKFLPARQIGILVISTSQGVVSHIEAKEKKIGGVLLAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_IGNH4 (30S ribosomal protein S8P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHA---LPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  I N E RG     + P S ++++ L IM+  GY+ +F+  D  R GKI+V LLGR+N C  +  R  V  R++     H    LP++  G ++I+T  G++ H+EA+++ VGG  + Y +
Sbjct:    7 LANALTTIYNNEVRGNKEAIIMPASKLIANVLRIMQKEGYVGEFEYIDDGRWGKIRVRLLGRINKCGAIKPRVSVSYRDLLVLPEHLRRFLPSKDVGILIISTSQGLMTHKEAIQKRVGGIAIAYVY 133          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  172 DALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            +AL A+ NAE  G     + P S  + S L +   RGYI  F   D  + G+ +VEL G +N+C  +  R    A E E +    LP R +G +V+TT  G++ H EA  + VGGQV+ Y +
Sbjct:    9 NALSALNNAESVGHLEQTVSPASNEIGSVLEVFYDRGYIDGFSFVDDGKAGEFEVELKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.608e-16
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            LND + +I NA R GK  +  +P + ++   L +M+   YIK F++ D  R GK K+ L   +N+C  +  R  VK   +E Y    LP   +G +++TT  GV+ + EA +  +GG++L Y +
Sbjct:    6 LNDVINSIKNASRLGKREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_META3 (30S ribosomal protein S8P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.608e-16
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  + N ER GK    +QP S ++     +M+ +GY+ +F+  +  + G  KVEL G +N C  +  R  VK  E E +    LP + +G ++++TP G++ H+EA    +GG+++ Y +
Sbjct:    7 LANALNHLSNCERVGKDVAYVQPASKLIGRVFKVMQDKGYMGNFEYIEDGKAGIYKVELTGHINKCGAVRPRYAVKKTEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKSNGLGGRLISYIY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_SULTO (30S ribosomal protein S8P OS=Sulfolobus tokodaii GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKARE---IEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  I N E R      + P S ++ + L  M+  GYI +F+  D  R GKI V+LLGR+N C  +  R  +K ++   +  Y    LP+++ G ++I+T  GV+ H++A+R  +GG  LGY +
Sbjct:    7 LANALTTIYNNEMRRNKQAIIMPASKLIINVLRAMQKEGYIGEFEFIDDGRSGKIVVQLLGRINKCGPIAPRYPLKYKDLLTLPDYVRRYLPSKEIGVLIISTNKGVMTHKDAIRERIGGVALGYVY 133          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_SULAC (30S ribosomal protein S8P OS=Sulfolobus acidocaldarius GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAR---EIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  + N E R      + P S ++ S L +M+  GYI +F+  D  R GKI V+LLGR+N C  ++ R  +       +  Y    LP+++ G ++I+TP GV+ H + +R  +GG  LGY +
Sbjct:    7 LANALATLYNNEMRRNKQALITPASKLIISVLRVMQKEGYIGEFEYIDDGRAGKIIVQLLGRINKCGPISPRYPLDYNGLLRLPDYIRKYLPSKEIGIIIISTPKGVMSHRDGIREKIGGVTLGYVY 133          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.589e-16
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            L +AL  I NAE  GK++  ++P S  + + L +M+  GYI DF+  D  + G   V L+GR+N C  +  R  V     E +    LP + +G +++TT  GV+   EA  + +GGQ+L Y +
Sbjct:    7 LANALSTIKNAEAIGKSSCVVRPASKNIGNVLKVMQDLGYIGDFEFIDDGKAGIYSVTLVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CN181894 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  166 LNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 537
            LND + +I NA R G+  +  +P + ++   L +M+   YIK F++ D  R GK K+ L   +N+C  +  R  VK   +E Y    LP   +G +++TT  GV+ + EA +  +GG++L Y +
Sbjct:    6 LNDVINSIKNASRLGRREIIAEPAAKLIGKVLKVMQDYNYIKSFEVIDESRGGKFKIVLNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
The following BLAST results are available for this feature:
BLAST of CN181894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METVA1.171e-1633.0630S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_PYRAR1.997e-1638.4030S ribosomal protein S8P OS=Pyrobaculum arsenatic... [more]
RS8_IGNH41.997e-1635.4330S ribosomal protein S8P OS=Ignicoccus hospitalis... [more]
RS8_HALMA1.997e-1636.8930S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_THEAC2.608e-1633.8730S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_META32.608e-1632.2630S ribosomal protein S8P OS=Methanococcus aeolicu... [more]
RS8_SULTO3.407e-1635.4330S ribosomal protein S8P OS=Sulfolobus tokodaii G... [more]
RS8_SULAC3.407e-1634.6530S ribosomal protein S8P OS=Sulfolobus acidocalda... [more]
RS8_METAC7.589e-1634.6830S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_THEVO9.912e-1633.0630S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181894 ID=CN181894; Name=CN181894; organism=Citrus sinensis; type=EST; length=648bp
TTAGTATAGCCAGCCATTGCCCGTCGCCGTAGCCACCACTGCTGCTGCTG
CCGCTGCCGCTGTGTCACCGTCGCCCTCCGCCATTCCTCGTGAAGATTGT
CACAAACCCTAGAATCCGTCGCTGCCGCCATCGTTGAAGTGCAGACGGTG
ATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGAATGCAGA
GAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACTGTCATGT
CTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGATTTTCAG
TTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTACTAGGCAG
GGTAAATGATTGTCGAGGTCTCACTTATAGGCAGGATGTCAAGGCAAGGG
AAATTGAAGGGTACACGGTGCATGCTCTTCCAACTAGACAGTGGGGCTAT
GTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGGCCCTGAG
GCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACATCTTTGC
CATCCAAACAATTTGGAAAGGAAGGAAGAGTTCTTTAACAGAGTTGCAGC
CTGCCAGAATGTGTTAAAACTTTTAAGTAGAGACCTTTTCAATTTTTG
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