CN188776

Overview
NameCN188776
Unique NameCN188776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 9.241e-85
Identity = 151/179 (84.36%), Postives = 165/179 (92.18%), Query Frame = 3
Query:    3 EGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 539
            +GVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:   41 KGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 9.241e-85
Identity = 151/179 (84.36%), Postives = 165/179 (92.18%), Query Frame = 3
Query:    3 EGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 539
            +GVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:   41 KGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.815e-71
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 3
Query:   96 CNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 536
            C    A  AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:    1 CGGCEAGSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.875e-61
Identity = 113/165 (68.48%), Postives = 129/165 (78.18%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 503
            V++FP CVHLVS E E +SSEALEA RI CNKY+ KY GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:   43 VEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.455e-61
Identity = 108/165 (65.45%), Postives = 136/165 (82.42%), Query Frame = 3
Query:   12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 506
            DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:   44 DEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 112/164 (68.29%), Postives = 129/164 (78.66%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   43 VDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 112/164 (68.29%), Postives = 129/164 (78.66%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   43 VDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 112/164 (68.29%), Postives = 129/164 (78.66%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   43 VDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 111/164 (67.68%), Postives = 130/164 (79.27%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP C H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:   43 VDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 2.707e-60
Identity = 112/164 (68.29%), Postives = 129/164 (78.66%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   43 VDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of CN188776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL101_ORYSJ9.241e-8584.3660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI9.241e-8584.3660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_TOBAC5.815e-7189.1260S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_DROME1.875e-6168.4860S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_DICDI5.455e-6165.4560S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_SHEEP1.587e-6068.2960S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG1.587e-6068.2960S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN1.587e-6068.2960S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10L_MACFA1.587e-6067.6860S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_RAT2.707e-6068.2960S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188776 ID=CN188776; Name=CN188776; organism=Citrus sinensis; type=EST; length=722bp
AGGAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAG
AAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAA
CAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGTGA
GGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTGCT
GGGGCTGATCGGCTCCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCCCA
AGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTT
GCAAGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAG
TTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATT
TACCAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGA
TTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTG
GCTCAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATAT
TTACTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTT
CCATTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGAC
ATGTTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTT
GCAATTTGCACTCTTCTATAAA
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