CN188776
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2) HSP 1 Score: 228.024 bits (580), Expect = 3.910e-59 Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3 Query: 6 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 509 GVDEFP C+HLVS E E ++SEALEAARI NKY+ K GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G ARV IGQ+L+SVR KDS+ A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+ +S I+PDG AK L G L ++ Sbjct: 42 GVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3) HSP 1 Score: 224.942 bits (572), Expect = 3.310e-58 Identity = 109/164 (66.46%), Postives = 128/164 (78.05%), Query Frame = 3 Query: 9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500 VDEFP H+VS E E +SSEALEAARI NKYM K G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K N H EALRRAKFKFPGRQKI +S+KWGFTKF+ ++ ++ ++PDG K + HGPL Sbjct: 43 VDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 7.373e-58 Identity = 109/164 (66.46%), Postives = 126/164 (76.83%), Query Frame = 3 Query: 9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500 VD+FP CVHLVS E E +SSEALEA RI CNKY+ K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+ DG + HGPL Sbjct: 43 VDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 2.372e-56 Identity = 108/164 (65.85%), Postives = 123/164 (75.00%), Query Frame = 3 Query: 9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500 VDEFP CVHLVS E E +SSEALEAARI NKYM +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G ARV IGQ++ SVR KDSN E LRRA++KFPG+QKII+S+KWGFT R +YL+ + + DG K L G L Sbjct: 43 VDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 4.333e-50 Identity = 99/171 (57.89%), Postives = 119/171 (69.59%), Query Frame = 3 Query: 12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 524 D FP HL+S E+E + SEALEAARI NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G ARV IGQ L+S+R K + AL+RA +KF GRQ I S WGFT+ +Y++WK E + DGV+ K+L G L + + RA Sbjct: 44 DTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.013e-47 Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 3 Query: 6 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 464 GV EFP V+ +S E+EN+S+EALEAARI NKYM K+AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G ARV Q +LS+R K+S A EALRRAK KFPG QKI VS K+GFT ++ + RI+ G Sbjct: 42 GVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.771e-27 Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 +F V LV+ E+ V+ ALEAAR+A N+Y+ K G+ +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV GQ +++VR N HA+EALRRA KFP I+V + Sbjct: 42 DFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25 Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 380 ++ + V + E+ + ALEAAR+A +KY++ G + RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV GQ +L VR K + HA+EALRR +K P R ++I Sbjct: 47 DYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25 Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKII 380 ++ + LV E + ALEAAR+ NKY++ G + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV G +++ VR + + HA+EALRRA K P +I+ Sbjct: 42 DYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25 Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 3 Query: 36 LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 383 LV E + ALEAARIA NKY+A G F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV G V+L V + + + +EALRR KFP +I++ Sbjct: 51 LVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166 The following BLAST results are available for this feature:
BLAST of CN188776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188776 ID=CN188776; Name=CN188776; organism=Citrus sinensis; type=EST; length=722bpback to top |