CN188776

Overview
NameCN188776
Unique NameCN188776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.910e-59
Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 3
Query:    6 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 509
            GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   42 GVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.310e-58
Identity = 109/164 (66.46%), Postives = 128/164 (78.05%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:   43 VDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.373e-58
Identity = 109/164 (66.46%), Postives = 126/164 (76.83%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VD+FP CVHLVS E E +SSEALEA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:   43 VDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.372e-56
Identity = 108/164 (65.85%), Postives = 123/164 (75.00%), Query Frame = 3
Query:    9 VDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 500
            VDEFP CVHLVS E E +SSEALEAARI  NKYM   +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:   43 VDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.333e-50
Identity = 99/171 (57.89%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 524
            D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:   44 DTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.013e-47
Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 3
Query:    6 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 464
            GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K+AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:   42 GVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.771e-27
Identity = 64/125 (51.20%), Postives = 85/125 (68.00%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389
            +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:   42 DFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 380
            ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:   47 DYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKII 380
            ++ +   LV  E   +   ALEAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ VR +  +  HA+EALRRA  K P   +I+
Sbjct:   42 DYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   36 LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 383
            LV  E   +   ALEAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:   51 LVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
The following BLAST results are available for this feature:
BLAST of CN188776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10A_SCHPO3.910e-5964.8860S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10L_HUMAN3.310e-5866.4660S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_BOMMA7.373e-5866.4660S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST2.372e-5665.8560S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR4.333e-5057.8960S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU2.013e-4763.4060S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_METKA1.771e-2751.2050S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_HYPBU4.824e-2549.1950S ribosomal protein L10e OS=Hyperthermus butylic... [more]
RL10_STAMF6.300e-2547.5450S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_AERPE8.228e-2551.7250S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188776 ID=CN188776; Name=CN188776; organism=Citrus sinensis; type=EST; length=722bp
AGGAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAG
AAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAA
CAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGTGA
GGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTGCT
GGGGCTGATCGGCTCCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCCCA
AGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTT
GCAAGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAG
TTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATT
TACCAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGA
TTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTG
GCTCAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATAT
TTACTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTT
CCATTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGAC
ATGTTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTT
GCAATTTGCACTCTTCTATAAA
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