CN188776
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22 Identity = 52/125 (41.60%), Postives = 82/125 (65.60%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 +FP + L++ E V ALEAAR++ N+ M + AG D F+L+V +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV V++ R ++++H + AL++A K P K+++++ Sbjct: 42 DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLPTPCKVVITK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21 Identity = 52/125 (41.60%), Postives = 81/125 (64.80%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 +FP + LV+ E + ALEAAR++ N+ M + AG D F+L+V +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV V++ R ++++ + ALR+A K P K+++++ Sbjct: 42 DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCKVVITK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21 Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 3 Query: 12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 +E P V LV E + +ALEAARI+ N+Y+ GK + +VRV+P VLR NK + AGADR+ GMR AFGK GT ARV GQ + ++ +N A+EA+RRA K P +++V + Sbjct: 41 EELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLPTPYRVVVEK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20 Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 EFP V LVS + ALE++RIA NKY+ G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ + A+EALRR K P KI+V++ Sbjct: 42 EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20 Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 EFP V L+S + ALE++RIA NKY+ + G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ + A+EALRR K P KI+V++ Sbjct: 42 EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20 Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 EFP V L+S + ALE++RIA NKY+ + G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ + A+EALRR K P KI+V++ Sbjct: 42 EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20 Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389 EFP V LVS + ALE++RIA NKY+ G+ + +RV+P +LR NKM + AGADR+ GMR +FGK GT A+V GQ ++++ + A+EALRR K P KI+V++ Sbjct: 42 EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLPTACKIVVTK 166
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20 Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-YAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 386 ++ + + L++ EK + ALEAAR+ KY++K A + F L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G++++ VR K + A+EAL+ A K P R KI +S Sbjct: 42 DYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTKIEIS 167
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19 Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 3 Query: 48 EKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 392 E + ALEAAR KY++K F+L++ +P HV+R NKML+ AGADRLQ GMR AFG P G ++ G+VL+ V +D N HA+EAL RA+ K P +I ++RK Sbjct: 56 EGGQIRVNALEAARQMAYKYLSKVLTDQNFYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLPCRIELTRK 170
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.775e-19 Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 3 Query: 15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 410 EFP V L E ++S +LEAARIA N+Y+ + GK + L++R +P H++R N M + AGADR+Q+GMRGAFGK + A V Q +++ + + A+ AL RA K P K+++ + +F Sbjct: 30 EFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF 161 The following BLAST results are available for this feature:
BLAST of CN188776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188776 ID=CN188776; Name=CN188776; organism=Citrus sinensis; type=EST; length=722bpback to top |