CN188776

Overview
NameCN188776
Unique NameCN188776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 50/116 (43.10%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 362
            +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   42 DFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 50/125 (40.00%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 383
            ++ F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++++R K  +   A++A + A  K P   +I+V
Sbjct:   42 DYDFEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 49/116 (42.24%), Postives = 66/116 (56.90%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 362
            EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:   42 EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 3
Query:   18 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 383
            FP  + L+  EK  +   ALEAARI  N+++ +  GK  +++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A++AL  A  K P   +I++
Sbjct:   44 FPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 362
            EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:   42 EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.077e-16
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 362
            +F F V L   +   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   42 DFEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389
            D++P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K     +I V R
Sbjct:   44 DDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 3
Query:   18 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            + + + LV+ EK  +   ALEAAR+   K +    G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A++A   A  K P + KI
Sbjct:   43 YDYELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
The following BLAST results are available for this feature:
BLAST of CN188776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRHO1.662e-1743.1050S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_METS51.662e-1740.0050S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_THEON2.170e-1742.2450S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_METBF6.314e-1740.9850S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_THEGJ1.077e-1641.3850S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_PYRAB1.077e-1642.2450S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]
RL10_HALMA1.407e-1637.8050S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_SULTO2.399e-1640.9850S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_SULIY2.399e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN2.399e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188776 ID=CN188776; Name=CN188776; organism=Citrus sinensis; type=EST; length=722bp
AGGAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAG
AAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAA
CAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGTGA
GGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTGCT
GGGGCTGATCGGCTCCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCCCA
AGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTT
GCAAGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAG
TTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATT
TACCAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGA
TTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTG
GCTCAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATAT
TTACTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTT
CCATTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGAC
ATGTTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTT
GCAATTTGCACTCTTCTATAAA
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