CN188776

Overview
NameCN188776
Unique NameCN188776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:171..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP 362
            EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V     +   A  A+ RAK K P
Sbjct:   42 EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389
            D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:   44 DDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 47/126 (37.30%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389
            D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGADR+  GMR AFG P GT AR+  G  L +  C+   +   +EA RRA  K     KI V R
Sbjct:   44 DDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAFGVPVGTAARIQPGDQLFTAYCEVEQAAAVKEAFRRAYNKITPPCKINVER 169          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   15 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKI 377
            ++ + V L++ E   +   ALEA R    K ++K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A+EAL+ A  K P R +I
Sbjct:   42 DYDYEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.031e-15
Identity = 48/135 (35.56%), Postives = 78/135 (57.78%), Query Frame = 3
Query:    6 GVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA--KFKFPGR------QKIIVS 386
            G  ++P  + L   E+  +   +LE+AR++ N+ M K  G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A++ LRRA  K   P R      QK+++S
Sbjct:   42 GPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of CN188776 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 3
Query:   12 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 389
            D++P  + L   E+  +   +LE++R++ N+++ K  G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +   +EA RRA  K     +I V R
Sbjct:   44 DDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of CN188776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SULIM2.399e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL2.399e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK2.399e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA2.399e-1640.6550S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_PYRKO2.399e-1641.3850S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_HALSA2.399e-1637.3050S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS32.399e-1637.3050S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_SULSO4.093e-1639.8450S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_HALWD2.031e-1535.5650S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_HALLT2.246e-1434.1350S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006M03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188776 ID=CN188776; Name=CN188776; organism=Citrus sinensis; type=EST; length=722bp
AGGAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAG
AAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAA
CAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGTGA
GGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTGCT
GGGGCTGATCGGCTCCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCCCA
AGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTT
GCAAGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAG
TTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATT
TACCAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGA
TTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTG
GCTCAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATAT
TTACTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTT
CCATTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGAC
ATGTTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTT
GCAATTTGCACTCTTCTATAAA
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