CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.289e-31
Identity = 71/151 (47.02%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTAT-FTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KA+ ++ G     G + F Q   D P +++G L  L  G HGFHVH  GDT+NGC S G HFNP  + HG P+   RH               T   + DN I L GP SI+GR++VVH D DDLG G H LSKTTGN+GGR+ CGIIG+
Sbjct:    1 MKAICIVAGE--ASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGEHPLSKTTGNSGGRLGCGIIGV 149          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31
Identity = 67/134 (50.00%), Postives = 82/134 (61.19%), Query Frame = -2
Query:  177 GTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 578
            GT+ F Q G     ++GS+SGL  G HGFH+H  GDT NGC+S G H+NP    HG P+D NRH            G    +V D+   LSG  SIIGR+VV+H   DDLG+G  + SKTTGNAG R+ACG IG
Sbjct:   42 GTIDFDQSGSF-LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 67/145 (46.21%), Postives = 86/145 (59.31%), Query Frame = -2
Query:  180 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 614
            AVA+LGG   V+G V F Q       + G++ GL+PG HG HVH  GD TN C S G HFNP G  HG P+D +RH            G A F + D Q+ +     +IGR++++    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVW---DVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30
Identity = 67/145 (46.21%), Postives = 86/145 (59.31%), Query Frame = -2
Query:  180 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 614
            AVA++ G+  V+G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH            G ATF + D Q+ +     +IGR++VV    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVW---DVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 70/152 (46.05%), Postives = 89/152 (58.55%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 617
            KAVAVL  ++ V G + F Q      TT+ G+++GL PG HGFH+H  G   NGC S   H+NP  K HG P +  +H            G A   ++ N I LSGP S+IGR++VVHA+PDDLGKG     E S  TGNAG R+ C IIG+
Sbjct:   41 KAVAVLK-SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKGNGDAREESLKTGNAGSRIVCSIIGI 191          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 67/145 (46.21%), Postives = 85/145 (58.62%), Query Frame = -2
Query:  180 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 614
            AVA+LGG+  V+G V F Q       + G++ GLKPG HG HVH  GD T  C S G HFNP G  HG P+D +RH            G A F + D  + +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = -2
Query:  180 AVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGII 614
            AVA+L G   ++G V F Q       + G++ GL+PG HG HVH  GD T  C S G HFNP G  HG P+D +RH            G ATF + D Q+ +     +IGR++V+    DDLG+GGH LSK TGN+G R+ACGII
Sbjct:   89 AVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVW---DVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 73/149 (48.99%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  177 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPG-PHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 620
            V A+AVL G   VKGTV F +E      +S  +SGLKP   HGFHVH  GD T+GC S   HFNP G  HG P+ + RH            G A ++  D+ I L G  +IIGRA+VVHAD DDLG GG+  S  TGNAG R+ C +IG
Sbjct:   35 VSAIAVLEGP--VKGTVRFVEESS-KVKISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 73/152 (48.03%), Postives = 84/152 (55.26%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MV+AVAVL G   V G V+F Q + +   +V   L G       GFH+H  GD TNGC S GPHFNP GK HG      RH            G    T  D+ I L G NSIIGR +V+HA  DDLGKG  E S  TGNAG R ACG+IG+
Sbjct:    1 MVRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 68/146 (46.58%), Postives = 81/146 (55.48%), Query Frame = -2
Query:  192 MVKAVAVLGGTEG-VKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVA 623
            MVKAV VL GT G V GTV F QE D  P  ++G + GL PG HGFHVHA GD TN               H  P D++RH              A   + D  + L+GP SIIGR +V+H   DDLGKGG++ S  TGNAGGR+A
Sbjct:    1 MVKAVCVLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKGGNDESLKTGNAGGRMA 139          
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_NPVOP1.289e-3147.02Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
SODE_CAEEL8.352e-3150.00Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
CCS_HUMAN3.174e-3046.21Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT4.145e-3046.21Copper chaperone for superoxide dismutase OS=Rattu... [more]
SODE_DIRIM7.071e-3046.05Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
CCS_PIG7.071e-3046.21Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_MOUSE7.071e-3045.52Copper chaperone for superoxide dismutase OS=Mus m... [more]
SODC_PBCV19.234e-3048.99Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODC_SCHPO5.986e-2948.03Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_LAMCR1.248e-2646.58Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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